Hb_023323_010

Information

Type -
Description -
Location Contig23323: 9087-14333
Sequence    

Annotation

kegg
ID bvg:104901296
description uncharacterized LOC104901296
nr
ID XP_010687151.1
description PREDICTED: uncharacterized protein LOC104901296 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID U5CUI2
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023323_010 0.0 - - PREDICTED: uncharacterized protein LOC104901296 [Beta vulgaris subsp. vulgaris]
2 Hb_005989_010 0.1639159381 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
3 Hb_009973_020 0.1865821729 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
4 Hb_047661_010 0.1956007428 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
5 Hb_001678_020 0.2009420621 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
6 Hb_000322_110 0.2529157099 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Jatropha curcas]
7 Hb_005656_060 0.2665176905 - - -
8 Hb_004480_070 0.2683400646 - - cytochrome P450, putative [Ricinus communis]
9 Hb_001767_020 0.2726882136 - - PREDICTED: WAT1-related protein At1g68170-like, partial [Jatropha curcas]
10 Hb_087340_010 0.2729375004 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001668_030 0.2772773706 - - conserved hypothetical protein [Ricinus communis]
12 Hb_058884_010 0.2828371236 - - PREDICTED: barwin-like [Jatropha curcas]
13 Hb_010620_010 0.2831110302 - - hypothetical protein JCGZ_22570 [Jatropha curcas]
14 Hb_000103_360 0.2846208641 - - -
15 Hb_001159_210 0.2848444093 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
16 Hb_000012_300 0.285727458 - - -
17 Hb_098466_010 0.2868224007 - - PREDICTED: uncharacterized protein LOC105640954 [Jatropha curcas]
18 Hb_005081_040 0.2876958915 - - -
19 Hb_041774_010 0.2879655436 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
20 Hb_183574_010 0.2901068223 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]

Gene co-expression network

sample Hb_023323_010 Hb_023323_010 Hb_005989_010 Hb_005989_010 Hb_023323_010--Hb_005989_010 Hb_009973_020 Hb_009973_020 Hb_023323_010--Hb_009973_020 Hb_047661_010 Hb_047661_010 Hb_023323_010--Hb_047661_010 Hb_001678_020 Hb_001678_020 Hb_023323_010--Hb_001678_020 Hb_000322_110 Hb_000322_110 Hb_023323_010--Hb_000322_110 Hb_005656_060 Hb_005656_060 Hb_023323_010--Hb_005656_060 Hb_005989_010--Hb_047661_010 Hb_005989_010--Hb_009973_020 Hb_003529_220 Hb_003529_220 Hb_005989_010--Hb_003529_220 Hb_001899_010 Hb_001899_010 Hb_005989_010--Hb_001899_010 Hb_001159_210 Hb_001159_210 Hb_005989_010--Hb_001159_210 Hb_009973_020--Hb_047661_010 Hb_021068_010 Hb_021068_010 Hb_009973_020--Hb_021068_010 Hb_159555_010 Hb_159555_010 Hb_009973_020--Hb_159555_010 Hb_009973_020--Hb_001678_020 Hb_047661_010--Hb_001159_210 Hb_004460_020 Hb_004460_020 Hb_047661_010--Hb_004460_020 Hb_002374_560 Hb_002374_560 Hb_047661_010--Hb_002374_560 Hb_000101_160 Hb_000101_160 Hb_001678_020--Hb_000101_160 Hb_010620_010 Hb_010620_010 Hb_001678_020--Hb_010620_010 Hb_000103_360 Hb_000103_360 Hb_001678_020--Hb_000103_360 Hb_002233_090 Hb_002233_090 Hb_001678_020--Hb_002233_090 Hb_000384_040 Hb_000384_040 Hb_001678_020--Hb_000384_040 Hb_000732_270 Hb_000732_270 Hb_000322_110--Hb_000732_270 Hb_000322_110--Hb_010620_010 Hb_178613_010 Hb_178613_010 Hb_000322_110--Hb_178613_010 Hb_004480_070 Hb_004480_070 Hb_000322_110--Hb_004480_070 Hb_137153_010 Hb_137153_010 Hb_000322_110--Hb_137153_010 Hb_000457_160 Hb_000457_160 Hb_005656_060--Hb_000457_160 Hb_005867_080 Hb_005867_080 Hb_005656_060--Hb_005867_080 Hb_022288_020 Hb_022288_020 Hb_005656_060--Hb_022288_020 Hb_041774_010 Hb_041774_010 Hb_005656_060--Hb_041774_010 Hb_001767_020 Hb_001767_020 Hb_005656_060--Hb_001767_020 Hb_010317_030 Hb_010317_030 Hb_005656_060--Hb_010317_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0652998 0.0373653 0.0139566 0 0.536251 0.695304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.124681 0.0403964 0.0693397

CAGE analysis