Hb_023344_040

Information

Type -
Description -
Location Contig23344: 69923-71767
Sequence    

Annotation

kegg
ID rcu:RCOM_0542290
description hypothetical protein
nr
ID XP_002526544.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SKM5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0542290 PE=4 SV=1
Gene Ontology
ID GO:0005634
description tetratricopeptide repeat-like superfamily isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24515: 69981-71760
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023344_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011344_030 0.0568355221 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
3 Hb_000992_090 0.0620150176 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
4 Hb_000111_460 0.0733325734 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
5 Hb_001135_170 0.0742033277 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
6 Hb_000009_470 0.084803802 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
7 Hb_014361_120 0.0869048405 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
8 Hb_011381_120 0.0881937573 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
9 Hb_001517_060 0.0910914573 - - phosphoribulose kinase, putative [Ricinus communis]
10 Hb_003053_080 0.0919914051 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002289_070 0.0928148036 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Jatropha curcas]
12 Hb_000261_390 0.0929625916 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
13 Hb_004631_020 0.0931571283 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
14 Hb_000029_390 0.0931976216 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
15 Hb_009093_020 0.0947385423 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]
16 Hb_000841_040 0.0947905015 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
17 Hb_003090_050 0.0954472505 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
18 Hb_007044_020 0.0975131292 - - unnamed protein product [Vitis vinifera]
19 Hb_001287_070 0.0976950304 - - latex plastidic aldolase-like protein [Hevea brasiliensis]
20 Hb_004712_230 0.0980262948 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_023344_040 Hb_023344_040 Hb_011344_030 Hb_011344_030 Hb_023344_040--Hb_011344_030 Hb_000992_090 Hb_000992_090 Hb_023344_040--Hb_000992_090 Hb_000111_460 Hb_000111_460 Hb_023344_040--Hb_000111_460 Hb_001135_170 Hb_001135_170 Hb_023344_040--Hb_001135_170 Hb_000009_470 Hb_000009_470 Hb_023344_040--Hb_000009_470 Hb_014361_120 Hb_014361_120 Hb_023344_040--Hb_014361_120 Hb_011344_030--Hb_000009_470 Hb_011344_030--Hb_000111_460 Hb_011344_030--Hb_001135_170 Hb_007044_020 Hb_007044_020 Hb_011344_030--Hb_007044_020 Hb_011344_030--Hb_000992_090 Hb_000992_090--Hb_001135_170 Hb_000992_090--Hb_000009_470 Hb_000029_390 Hb_000029_390 Hb_000992_090--Hb_000029_390 Hb_000103_240 Hb_000103_240 Hb_000992_090--Hb_000103_240 Hb_003090_050 Hb_003090_050 Hb_000111_460--Hb_003090_050 Hb_008748_050 Hb_008748_050 Hb_000111_460--Hb_008748_050 Hb_001287_070 Hb_001287_070 Hb_000111_460--Hb_001287_070 Hb_000841_040 Hb_000841_040 Hb_000111_460--Hb_000841_040 Hb_005000_120 Hb_005000_120 Hb_000111_460--Hb_005000_120 Hb_011381_120 Hb_011381_120 Hb_000111_460--Hb_011381_120 Hb_004631_020 Hb_004631_020 Hb_001135_170--Hb_004631_020 Hb_001832_180 Hb_001832_180 Hb_001135_170--Hb_001832_180 Hb_000261_390 Hb_000261_390 Hb_001135_170--Hb_000261_390 Hb_001517_060 Hb_001517_060 Hb_000009_470--Hb_001517_060 Hb_000009_470--Hb_004631_020 Hb_002534_090 Hb_002534_090 Hb_000009_470--Hb_002534_090 Hb_000009_470--Hb_007044_020 Hb_004712_230 Hb_004712_230 Hb_000009_470--Hb_004712_230 Hb_000545_180 Hb_000545_180 Hb_014361_120--Hb_000545_180 Hb_000352_230 Hb_000352_230 Hb_014361_120--Hb_000352_230 Hb_002289_070 Hb_002289_070 Hb_014361_120--Hb_002289_070 Hb_009771_090 Hb_009771_090 Hb_014361_120--Hb_009771_090 Hb_014361_120--Hb_011381_120 Hb_000098_040 Hb_000098_040 Hb_014361_120--Hb_000098_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.215086 2.07054 13.7596 4.90977 0.04705 0.0487471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.112407 0.110547 0.333424 0.105776 47.63

CAGE analysis