Hb_023344_050

Information

Type -
Description -
Location Contig23344: 72957-76218
Sequence    

Annotation

kegg
ID pop:POPTR_0002s25850g
description POPTRDRAFT_816976; hypothetical protein
nr
ID XP_012085224.1
description PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JUH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17621 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24516: 73069-76323
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023344_050 0.0 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
2 Hb_000928_130 0.0974010147 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
3 Hb_002026_120 0.0980517582 - - hypothetical protein CISIN_1g025276mg [Citrus sinensis]
4 Hb_025645_030 0.1020683035 - - -
5 Hb_005278_040 0.1051098544 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
6 Hb_001240_020 0.111388417 - - PREDICTED: uncharacterized protein LOC105641171 [Jatropha curcas]
7 Hb_000056_250 0.1167644257 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
8 Hb_001096_030 0.1197760278 - - uridylate kinase plant, putative [Ricinus communis]
9 Hb_000178_120 0.1203622479 - - PREDICTED: histone H2B [Jatropha curcas]
10 Hb_000445_490 0.1210173399 - - -
11 Hb_000096_150 0.1221187898 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
12 Hb_147752_010 0.1240817597 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
13 Hb_001172_100 0.1251873445 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
14 Hb_010402_050 0.1252543738 - - -
15 Hb_000320_330 0.1288646283 - - uncharacterized protein LOC100527884 [Glycine max]
16 Hb_083380_010 0.1301637641 - - -
17 Hb_000530_070 0.1309604791 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
18 Hb_062135_020 0.1321463771 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
19 Hb_007441_260 0.1336234892 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
20 Hb_003581_220 0.1345451998 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_023344_050 Hb_023344_050 Hb_000928_130 Hb_000928_130 Hb_023344_050--Hb_000928_130 Hb_002026_120 Hb_002026_120 Hb_023344_050--Hb_002026_120 Hb_025645_030 Hb_025645_030 Hb_023344_050--Hb_025645_030 Hb_005278_040 Hb_005278_040 Hb_023344_050--Hb_005278_040 Hb_001240_020 Hb_001240_020 Hb_023344_050--Hb_001240_020 Hb_000056_250 Hb_000056_250 Hb_023344_050--Hb_000056_250 Hb_000928_130--Hb_002026_120 Hb_000096_150 Hb_000096_150 Hb_000928_130--Hb_000096_150 Hb_000318_160 Hb_000318_160 Hb_000928_130--Hb_000318_160 Hb_000445_490 Hb_000445_490 Hb_000928_130--Hb_000445_490 Hb_000928_130--Hb_001240_020 Hb_002026_120--Hb_000096_150 Hb_000530_070 Hb_000530_070 Hb_002026_120--Hb_000530_070 Hb_002026_120--Hb_000318_160 Hb_001314_040 Hb_001314_040 Hb_002026_120--Hb_001314_040 Hb_004162_180 Hb_004162_180 Hb_025645_030--Hb_004162_180 Hb_001225_010 Hb_001225_010 Hb_025645_030--Hb_001225_010 Hb_000110_170 Hb_000110_170 Hb_025645_030--Hb_000110_170 Hb_001172_100 Hb_001172_100 Hb_025645_030--Hb_001172_100 Hb_006420_030 Hb_006420_030 Hb_025645_030--Hb_006420_030 Hb_000417_260 Hb_000417_260 Hb_005278_040--Hb_000417_260 Hb_001008_090 Hb_001008_090 Hb_005278_040--Hb_001008_090 Hb_002324_010 Hb_002324_010 Hb_005278_040--Hb_002324_010 Hb_000384_120 Hb_000384_120 Hb_005278_040--Hb_000384_120 Hb_005278_040--Hb_000056_250 Hb_138585_040 Hb_138585_040 Hb_005278_040--Hb_138585_040 Hb_147752_010 Hb_147752_010 Hb_001240_020--Hb_147752_010 Hb_000302_290 Hb_000302_290 Hb_001240_020--Hb_000302_290 Hb_000061_130 Hb_000061_130 Hb_001240_020--Hb_000061_130 Hb_001240_020--Hb_000445_490 Hb_001085_270 Hb_001085_270 Hb_001240_020--Hb_001085_270 Hb_000056_250--Hb_000096_150 Hb_003291_020 Hb_003291_020 Hb_000056_250--Hb_003291_020 Hb_027751_060 Hb_027751_060 Hb_000056_250--Hb_027751_060 Hb_000056_250--Hb_000417_260 Hb_130719_010 Hb_130719_010 Hb_000056_250--Hb_130719_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.24323 0.87573 3.59762 7.66421 0.71534 2.09296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2406 26.2953 18.419 5.85419 6.82358

CAGE analysis