Hb_023344_070

Information

Type -
Description -
Location Contig23344: 82910-86241
Sequence    

Annotation

kegg
ID rcu:RCOM_2078690
description Receptor protein kinase CLAVATA1 precursor, putative (EC:1.3.1.74 2.7.11.24)
nr
ID XP_002535195.1
description Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
swissprot
ID Q9M0G7
description Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1
trembl
ID B9TAC6
description Receptor protein kinase CLAVATA1, putative OS=Ricinus communis GN=RCOM_2078690 PE=4 SV=1
Gene Ontology
ID GO:0005622
description leucine-rich repeat receptor-like protein kinase pxl2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24521: 83286-84210 , PASA_asmbl_24522: 84361-84628
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023344_070 0.0 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
2 Hb_026198_030 0.2148023252 - - PREDICTED: ABC transporter G family member 25 [Jatropha curcas]
3 Hb_000384_110 0.2216936697 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002876_160 0.237469245 - - sucrose transporter 1 [Hevea brasiliensis]
5 Hb_018118_030 0.237534536 - - PREDICTED: putative multidrug resistance protein, partial [Musa acuminata subsp. malaccensis]
6 Hb_001123_240 0.2418029323 - - JAZ10 [Hevea brasiliensis]
7 Hb_000398_050 0.2460440667 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
8 Hb_001554_010 0.2470332266 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
9 Hb_000256_060 0.2550205608 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]
10 Hb_001486_190 0.259800116 - - hypothetical protein JCGZ_02702 [Jatropha curcas]
11 Hb_001124_220 0.2600400189 - - DsRNA-binding protein 5, putative isoform 1 [Theobroma cacao]
12 Hb_005725_050 0.2602270105 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
13 Hb_004162_060 0.2637549376 - - unnamed protein product [Vitis vinifera]
14 Hb_000554_030 0.2658077307 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X1 [Jatropha curcas]
15 Hb_000028_500 0.2724560638 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
16 Hb_000665_020 0.2738739246 - - -
17 Hb_005539_260 0.2813222877 - - PREDICTED: potassium transporter 6 [Jatropha curcas]
18 Hb_023344_060 0.2821461446 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA11 isoform X2 [Jatropha curcas]
19 Hb_000856_050 0.2829053354 - - PREDICTED: HIPL1 protein-like [Jatropha curcas]
20 Hb_000133_070 0.2837662372 - - -

Gene co-expression network

sample Hb_023344_070 Hb_023344_070 Hb_026198_030 Hb_026198_030 Hb_023344_070--Hb_026198_030 Hb_000384_110 Hb_000384_110 Hb_023344_070--Hb_000384_110 Hb_002876_160 Hb_002876_160 Hb_023344_070--Hb_002876_160 Hb_018118_030 Hb_018118_030 Hb_023344_070--Hb_018118_030 Hb_001123_240 Hb_001123_240 Hb_023344_070--Hb_001123_240 Hb_000398_050 Hb_000398_050 Hb_023344_070--Hb_000398_050 Hb_026198_030--Hb_000398_050 Hb_000028_500 Hb_000028_500 Hb_026198_030--Hb_000028_500 Hb_000062_640 Hb_000062_640 Hb_026198_030--Hb_000062_640 Hb_000103_420 Hb_000103_420 Hb_026198_030--Hb_000103_420 Hb_026198_030--Hb_002876_160 Hb_003938_160 Hb_003938_160 Hb_000384_110--Hb_003938_160 Hb_005188_030 Hb_005188_030 Hb_000384_110--Hb_005188_030 Hb_000931_020 Hb_000931_020 Hb_000384_110--Hb_000931_020 Hb_000384_110--Hb_018118_030 Hb_000984_310 Hb_000984_310 Hb_000384_110--Hb_000984_310 Hb_000622_340 Hb_000622_340 Hb_000384_110--Hb_000622_340 Hb_002700_080 Hb_002700_080 Hb_002876_160--Hb_002700_080 Hb_002026_060 Hb_002026_060 Hb_002876_160--Hb_002026_060 Hb_002876_160--Hb_005188_030 Hb_023344_060 Hb_023344_060 Hb_002876_160--Hb_023344_060 Hb_002876_160--Hb_000384_110 Hb_000665_020 Hb_000665_020 Hb_002876_160--Hb_000665_020 Hb_144096_010 Hb_144096_010 Hb_018118_030--Hb_144096_010 Hb_018118_030--Hb_000931_020 Hb_018118_030--Hb_005188_030 Hb_063716_090 Hb_063716_090 Hb_018118_030--Hb_063716_090 Hb_135757_010 Hb_135757_010 Hb_018118_030--Hb_135757_010 Hb_002835_430 Hb_002835_430 Hb_001123_240--Hb_002835_430 Hb_000788_060 Hb_000788_060 Hb_001123_240--Hb_000788_060 Hb_075247_010 Hb_075247_010 Hb_001123_240--Hb_075247_010 Hb_004162_060 Hb_004162_060 Hb_001123_240--Hb_004162_060 Hb_004453_070 Hb_004453_070 Hb_001123_240--Hb_004453_070 Hb_000398_050--Hb_000028_500 Hb_000191_010 Hb_000191_010 Hb_000398_050--Hb_000191_010 Hb_001894_180 Hb_001894_180 Hb_000398_050--Hb_001894_180 Hb_000554_030 Hb_000554_030 Hb_000398_050--Hb_000554_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.163621 1.22552 0.563589 3.09673 0.59657 0.193653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.208093 0.100769 2.18912 0.729827 0.0536546

CAGE analysis