Hb_023344_120

Information

Type -
Description -
Location Contig23344: 117330-124025
Sequence    

Annotation

kegg
ID vvi:100242849
description NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial
nr
ID XP_012085214.1
description PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
swissprot
ID Q9SK66
description NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Arabidopsis thaliana GN=At2g20360 PE=1 SV=2
trembl
ID A0A067K2F8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17613 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24533: 119365-123917 , PASA_asmbl_24534: 120136-120766
cDNA
(Sanger)
(ID:Location)		 042_F23.ab1: 120880-123917

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023344_120 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
2 Hb_006634_070 0.0554718656 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
3 Hb_000676_250 0.0603709479 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
4 Hb_006455_120 0.0613133059 - - n6-DNA-methyltransferase, putative [Ricinus communis]
5 Hb_027380_130 0.0664973498 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
6 Hb_011995_010 0.0679189586 - - dc50, putative [Ricinus communis]
7 Hb_005269_070 0.068487709 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
8 Hb_065525_040 0.0685742219 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
9 Hb_000331_550 0.07012901 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
10 Hb_011037_030 0.0703159702 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
11 Hb_000883_020 0.0723053666 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
12 Hb_004619_030 0.0726637922 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
13 Hb_032986_010 0.0736182733 - - Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]
14 Hb_005144_160 0.0737251193 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]
15 Hb_001205_120 0.0739812 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
16 Hb_000915_180 0.0750784326 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
17 Hb_026198_070 0.0753129832 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
18 Hb_156279_020 0.0759334013 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
19 Hb_001357_350 0.0781983169 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001409_020 0.0782040879 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]

Gene co-expression network

sample Hb_023344_120 Hb_023344_120 Hb_006634_070 Hb_006634_070 Hb_023344_120--Hb_006634_070 Hb_000676_250 Hb_000676_250 Hb_023344_120--Hb_000676_250 Hb_006455_120 Hb_006455_120 Hb_023344_120--Hb_006455_120 Hb_027380_130 Hb_027380_130 Hb_023344_120--Hb_027380_130 Hb_011995_010 Hb_011995_010 Hb_023344_120--Hb_011995_010 Hb_005269_070 Hb_005269_070 Hb_023344_120--Hb_005269_070 Hb_006634_070--Hb_006455_120 Hb_011037_030 Hb_011037_030 Hb_006634_070--Hb_011037_030 Hb_001409_020 Hb_001409_020 Hb_006634_070--Hb_001409_020 Hb_000156_010 Hb_000156_010 Hb_006634_070--Hb_000156_010 Hb_005144_160 Hb_005144_160 Hb_006634_070--Hb_005144_160 Hb_003177_030 Hb_003177_030 Hb_000676_250--Hb_003177_030 Hb_000676_250--Hb_027380_130 Hb_000019_030 Hb_000019_030 Hb_000676_250--Hb_000019_030 Hb_001711_020 Hb_001711_020 Hb_000676_250--Hb_001711_020 Hb_000676_250--Hb_005144_160 Hb_006455_120--Hb_011037_030 Hb_000300_500 Hb_000300_500 Hb_006455_120--Hb_000300_500 Hb_000603_150 Hb_000603_150 Hb_006455_120--Hb_000603_150 Hb_000580_180 Hb_000580_180 Hb_006455_120--Hb_000580_180 Hb_006455_120--Hb_000156_010 Hb_001300_150 Hb_001300_150 Hb_027380_130--Hb_001300_150 Hb_001159_130 Hb_001159_130 Hb_027380_130--Hb_001159_130 Hb_065525_040 Hb_065525_040 Hb_027380_130--Hb_065525_040 Hb_000703_350 Hb_000703_350 Hb_027380_130--Hb_000703_350 Hb_000010_400 Hb_000010_400 Hb_011995_010--Hb_000010_400 Hb_001248_060 Hb_001248_060 Hb_011995_010--Hb_001248_060 Hb_010618_010 Hb_010618_010 Hb_011995_010--Hb_010618_010 Hb_011995_010--Hb_001409_020 Hb_000883_020 Hb_000883_020 Hb_011995_010--Hb_000883_020 Hb_000563_320 Hb_000563_320 Hb_011995_010--Hb_000563_320 Hb_156279_020 Hb_156279_020 Hb_005269_070--Hb_156279_020 Hb_000331_260 Hb_000331_260 Hb_005269_070--Hb_000331_260 Hb_002169_040 Hb_002169_040 Hb_005269_070--Hb_002169_040 Hb_000329_320 Hb_000329_320 Hb_005269_070--Hb_000329_320 Hb_000985_030 Hb_000985_030 Hb_005269_070--Hb_000985_030 Hb_005269_070--Hb_006634_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.3705 34.7994 46.4256 50.6247 45.7562 46.4068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.0817 42.4282 62.7804 42.3458 42.6962

CAGE analysis