Hb_023344_150

Information

Type -
Description -
Location Contig23344: 156577-160859
Sequence    

Annotation

kegg
ID cic:CICLE_v10018880mg
description hypothetical protein
nr
ID XP_012085208.1
description PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JR66
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17609 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24538: 156671-158240
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023344_150 0.0 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
2 Hb_000983_050 0.0735631225 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_000731_200 0.0789540988 - - PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Jatropha curcas]
4 Hb_001328_080 0.079206142 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
5 Hb_000023_300 0.0854993541 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
6 Hb_008748_030 0.0858288087 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000227_160 0.0860872549 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
8 Hb_028487_160 0.0861182238 - - clathrin assembly protein, putative [Ricinus communis]
9 Hb_006452_120 0.090006088 - - PREDICTED: protein FAM188A [Jatropha curcas]
10 Hb_004607_090 0.0909122171 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
11 Hb_007839_020 0.0914405968 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002915_060 0.0917239624 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
13 Hb_004994_020 0.0924925379 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
14 Hb_011249_070 0.0930532442 - - hypothetical protein POPTR_0018s12610g [Populus trichocarpa]
15 Hb_000836_280 0.0933469499 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
16 Hb_003688_180 0.0936593757 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
17 Hb_012262_030 0.0942359208 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
18 Hb_011360_050 0.0945877228 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
19 Hb_000329_230 0.0957746496 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
20 Hb_017387_010 0.0964446313 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]

Gene co-expression network

sample Hb_023344_150 Hb_023344_150 Hb_000983_050 Hb_000983_050 Hb_023344_150--Hb_000983_050 Hb_000731_200 Hb_000731_200 Hb_023344_150--Hb_000731_200 Hb_001328_080 Hb_001328_080 Hb_023344_150--Hb_001328_080 Hb_000023_300 Hb_000023_300 Hb_023344_150--Hb_000023_300 Hb_008748_030 Hb_008748_030 Hb_023344_150--Hb_008748_030 Hb_000227_160 Hb_000227_160 Hb_023344_150--Hb_000227_160 Hb_004607_090 Hb_004607_090 Hb_000983_050--Hb_004607_090 Hb_011360_050 Hb_011360_050 Hb_000983_050--Hb_011360_050 Hb_002982_020 Hb_002982_020 Hb_000983_050--Hb_002982_020 Hb_000367_090 Hb_000367_090 Hb_000983_050--Hb_000367_090 Hb_000046_170 Hb_000046_170 Hb_000983_050--Hb_000046_170 Hb_189216_010 Hb_189216_010 Hb_000731_200--Hb_189216_010 Hb_004531_150 Hb_004531_150 Hb_000731_200--Hb_004531_150 Hb_000567_230 Hb_000567_230 Hb_000731_200--Hb_000567_230 Hb_006970_050 Hb_006970_050 Hb_000731_200--Hb_006970_050 Hb_000120_810 Hb_000120_810 Hb_000731_200--Hb_000120_810 Hb_007839_020 Hb_007839_020 Hb_001328_080--Hb_007839_020 Hb_001329_200 Hb_001329_200 Hb_001328_080--Hb_001329_200 Hb_002915_060 Hb_002915_060 Hb_001328_080--Hb_002915_060 Hb_006006_040 Hb_006006_040 Hb_001328_080--Hb_006006_040 Hb_000926_260 Hb_000926_260 Hb_001328_080--Hb_000926_260 Hb_012262_030 Hb_012262_030 Hb_000023_300--Hb_012262_030 Hb_000023_300--Hb_000227_160 Hb_001097_040 Hb_001097_040 Hb_000023_300--Hb_001097_040 Hb_001051_070 Hb_001051_070 Hb_000023_300--Hb_001051_070 Hb_010672_020 Hb_010672_020 Hb_000023_300--Hb_010672_020 Hb_000023_300--Hb_008748_030 Hb_008748_030--Hb_000227_160 Hb_000012_310 Hb_000012_310 Hb_008748_030--Hb_000012_310 Hb_006452_120 Hb_006452_120 Hb_008748_030--Hb_006452_120 Hb_000574_450 Hb_000574_450 Hb_008748_030--Hb_000574_450 Hb_028487_160 Hb_028487_160 Hb_008748_030--Hb_028487_160 Hb_000778_010 Hb_000778_010 Hb_008748_030--Hb_000778_010 Hb_000227_160--Hb_028487_160 Hb_000227_160--Hb_012262_030 Hb_000227_160--Hb_000367_090 Hb_008289_040 Hb_008289_040 Hb_000227_160--Hb_008289_040 Hb_000029_190 Hb_000029_190 Hb_000227_160--Hb_000029_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.44885 6.32752 4.4931 9.34728 2.10761 3.27904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.57609 4.4651 3.25611 4.53668 4.77529

CAGE analysis