Hb_023371_020

Information

Type -
Description -
Location Contig23371: 22916-27459
Sequence    

Annotation

kegg
ID rcu:RCOM_0622880
description DNA-3-methyladenine glycosylase, putative (EC:3.2.2.20)
nr
ID XP_012071504.1
description PREDICTED: uncharacterized protein LOC105633512 [Jatropha curcas]
swissprot
ID Q7VG78
description Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1
trembl
ID A0A067KRC5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04030 PE=4 SV=1
Gene Ontology
ID GO:0008725
description dna glycosylase superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24543: 23058-27436
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023371_020 0.0 - - PREDICTED: uncharacterized protein LOC105633512 [Jatropha curcas]
2 Hb_003878_090 0.0713487018 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
3 Hb_001141_420 0.0734060244 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
4 Hb_004545_110 0.0734149631 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
5 Hb_004157_050 0.0735647337 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
6 Hb_133702_010 0.0748229106 - - PREDICTED: reticulon-4-interacting protein 1, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_000260_350 0.0763775391 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000347_240 0.0771141496 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
9 Hb_000708_030 0.0775777277 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
10 Hb_000483_300 0.0789845596 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
11 Hb_168978_010 0.082875551 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
12 Hb_010931_130 0.0829220718 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]
13 Hb_000976_120 0.0841761509 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
14 Hb_011214_090 0.0843670453 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
15 Hb_023313_030 0.0845813872 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000521_250 0.085091533 - - PREDICTED: protein N-terminal asparagine amidohydrolase isoform X2 [Jatropha curcas]
17 Hb_000069_720 0.0854168334 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
18 Hb_002301_150 0.0863872961 - - Drought-responsive family protein [Theobroma cacao]
19 Hb_006570_080 0.0869844422 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
20 Hb_001489_090 0.0882854672 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]

Gene co-expression network

sample Hb_023371_020 Hb_023371_020 Hb_003878_090 Hb_003878_090 Hb_023371_020--Hb_003878_090 Hb_001141_420 Hb_001141_420 Hb_023371_020--Hb_001141_420 Hb_004545_110 Hb_004545_110 Hb_023371_020--Hb_004545_110 Hb_004157_050 Hb_004157_050 Hb_023371_020--Hb_004157_050 Hb_133702_010 Hb_133702_010 Hb_023371_020--Hb_133702_010 Hb_000260_350 Hb_000260_350 Hb_023371_020--Hb_000260_350 Hb_000976_120 Hb_000976_120 Hb_003878_090--Hb_000976_120 Hb_003861_060 Hb_003861_060 Hb_003878_090--Hb_003861_060 Hb_000069_720 Hb_000069_720 Hb_003878_090--Hb_000069_720 Hb_014834_150 Hb_014834_150 Hb_003878_090--Hb_014834_150 Hb_000840_200 Hb_000840_200 Hb_003878_090--Hb_000840_200 Hb_003878_090--Hb_133702_010 Hb_000603_160 Hb_000603_160 Hb_001141_420--Hb_000603_160 Hb_005563_070 Hb_005563_070 Hb_001141_420--Hb_005563_070 Hb_003058_120 Hb_003058_120 Hb_001141_420--Hb_003058_120 Hb_000220_100 Hb_000220_100 Hb_001141_420--Hb_000220_100 Hb_168978_010 Hb_168978_010 Hb_001141_420--Hb_168978_010 Hb_000666_100 Hb_000666_100 Hb_004545_110--Hb_000666_100 Hb_000080_130 Hb_000080_130 Hb_004545_110--Hb_000080_130 Hb_008616_050 Hb_008616_050 Hb_004545_110--Hb_008616_050 Hb_004545_110--Hb_133702_010 Hb_000347_240 Hb_000347_240 Hb_004545_110--Hb_000347_240 Hb_005800_030 Hb_005800_030 Hb_004545_110--Hb_005800_030 Hb_001301_110 Hb_001301_110 Hb_004157_050--Hb_001301_110 Hb_004157_050--Hb_000069_720 Hb_000665_140 Hb_000665_140 Hb_004157_050--Hb_000665_140 Hb_001123_040 Hb_001123_040 Hb_004157_050--Hb_001123_040 Hb_004157_050--Hb_003058_120 Hb_011218_090 Hb_011218_090 Hb_004157_050--Hb_011218_090 Hb_133702_010--Hb_005800_030 Hb_004452_120 Hb_004452_120 Hb_133702_010--Hb_004452_120 Hb_000721_030 Hb_000721_030 Hb_133702_010--Hb_000721_030 Hb_007975_060 Hb_007975_060 Hb_133702_010--Hb_007975_060 Hb_001511_060 Hb_001511_060 Hb_000260_350--Hb_001511_060 Hb_000349_260 Hb_000349_260 Hb_000260_350--Hb_000349_260 Hb_004990_010 Hb_004990_010 Hb_000260_350--Hb_004990_010 Hb_093458_040 Hb_093458_040 Hb_000260_350--Hb_093458_040 Hb_005054_110 Hb_005054_110 Hb_000260_350--Hb_005054_110 Hb_000260_350--Hb_168978_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.72647 4.27931 6.26954 8.63895 5.00064 4.26226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.1888 6.46767 5.83417 5.74615 7.4424

CAGE analysis