Hb_023386_030

Information

Type -
Description -
Location Contig23386: 18571-19839
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24558: 12821-24756
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023386_030 0.0 - - -
2 Hb_015824_020 0.0042326839 - - -
3 Hb_000497_310 0.0598968035 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005666_030 0.0728552501 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
5 Hb_004968_090 0.0749326712 - - PREDICTED: uncharacterized protein LOC104882781 [Vitis vinifera]
6 Hb_002041_010 0.0774345151 - - -
7 Hb_005551_030 0.0864636718 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
8 Hb_001231_020 0.1000849678 - - -
9 Hb_011987_010 0.1013544983 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
10 Hb_001691_130 0.1042126459 - - PREDICTED: uncharacterized protein LOC104587431 [Nelumbo nucifera]
11 Hb_106274_010 0.1109927819 - - hypothetical protein VITISV_008825 [Vitis vinifera]
12 Hb_002630_030 0.1151524595 - - OSIGBa0132I10.1 [Oryza sativa Indica Group]
13 Hb_000284_050 0.1277480259 - - hypothetical protein L484_026849 [Morus notabilis]
14 Hb_011931_090 0.1310784236 - - -
15 Hb_011716_120 0.1380004392 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
16 Hb_001172_110 0.1495901848 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
17 Hb_002375_100 0.1495926854 - - PREDICTED: uncharacterized protein LOC104878944 [Vitis vinifera]
18 Hb_001307_230 0.1496013751 - - PREDICTED: interferon-related developmental regulator 1-like [Jatropha curcas]
19 Hb_026317_020 0.1496214047 - - hypothetical protein VITISV_035911 [Vitis vinifera]
20 Hb_000723_150 0.1496275258 - - PREDICTED: high affinity nitrate transporter 2.4-like [Jatropha curcas]

Gene co-expression network

sample Hb_023386_030 Hb_023386_030 Hb_015824_020 Hb_015824_020 Hb_023386_030--Hb_015824_020 Hb_000497_310 Hb_000497_310 Hb_023386_030--Hb_000497_310 Hb_005666_030 Hb_005666_030 Hb_023386_030--Hb_005666_030 Hb_004968_090 Hb_004968_090 Hb_023386_030--Hb_004968_090 Hb_002041_010 Hb_002041_010 Hb_023386_030--Hb_002041_010 Hb_005551_030 Hb_005551_030 Hb_023386_030--Hb_005551_030 Hb_015824_020--Hb_000497_310 Hb_015824_020--Hb_005666_030 Hb_015824_020--Hb_004968_090 Hb_015824_020--Hb_002041_010 Hb_015824_020--Hb_005551_030 Hb_000497_310--Hb_002041_010 Hb_000284_050 Hb_000284_050 Hb_000497_310--Hb_000284_050 Hb_000497_310--Hb_004968_090 Hb_000497_310--Hb_005666_030 Hb_005666_030--Hb_004968_090 Hb_005666_030--Hb_005551_030 Hb_001231_020 Hb_001231_020 Hb_005666_030--Hb_001231_020 Hb_001691_130 Hb_001691_130 Hb_005666_030--Hb_001691_130 Hb_106274_010 Hb_106274_010 Hb_005666_030--Hb_106274_010 Hb_002630_030 Hb_002630_030 Hb_005666_030--Hb_002630_030 Hb_004968_090--Hb_005551_030 Hb_004968_090--Hb_001231_020 Hb_004968_090--Hb_001691_130 Hb_004968_090--Hb_106274_010 Hb_004968_090--Hb_002630_030 Hb_002041_010--Hb_000284_050 Hb_010053_050 Hb_010053_050 Hb_002041_010--Hb_010053_050 Hb_010053_060 Hb_010053_060 Hb_002041_010--Hb_010053_060 Hb_005551_030--Hb_001231_020 Hb_005551_030--Hb_106274_010 Hb_005551_030--Hb_001691_130 Hb_005551_030--Hb_002630_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0152915 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0295448 0.302389

CAGE analysis