Hb_023386_050

Information

Type -
Description -
Location Contig23386: 31356-31709
Sequence    

Annotation

kegg
ID rcu:RCOM_1060970
description hypothetical protein
nr
ID XP_002528923.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SSF4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1060970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24559: 31350-31603
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023386_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001123_170 0.104128391 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000100_210 0.1106244732 - - PREDICTED: selenium-binding protein 1-like [Jatropha curcas]
4 Hb_002375_060 0.1190743229 - - PREDICTED: uncharacterized protein LOC105628271 [Jatropha curcas]
5 Hb_003656_170 0.119830486 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
6 Hb_002324_050 0.1210752826 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
7 Hb_005000_050 0.1221976823 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
8 Hb_002078_250 0.1235556022 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004544_090 0.1241409376 - - cytochrome P450, putative [Ricinus communis]
10 Hb_002343_020 0.1261079242 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
11 Hb_006052_060 0.1271988123 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
12 Hb_000369_070 0.1275759358 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
13 Hb_172676_010 0.127764348 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
14 Hb_005539_100 0.1284568135 - - nucleoside transporter, putative [Ricinus communis]
15 Hb_005375_070 0.1300426352 transcription factor TF Family: MYB-related PREDICTED: protein LHY [Jatropha curcas]
16 Hb_000069_430 0.1304225861 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
17 Hb_001699_050 0.1306968541 transcription factor TF Family: MYB hypothetical protein POPTR_0005s11410g [Populus trichocarpa]
18 Hb_003964_010 0.1345793369 transcription factor TF Family: WRKY hypothetical protein POPTR_0008s09360g [Populus trichocarpa]
19 Hb_017604_020 0.1383352521 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
20 Hb_000402_030 0.1398446622 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_023386_050 Hb_023386_050 Hb_001123_170 Hb_001123_170 Hb_023386_050--Hb_001123_170 Hb_000100_210 Hb_000100_210 Hb_023386_050--Hb_000100_210 Hb_002375_060 Hb_002375_060 Hb_023386_050--Hb_002375_060 Hb_003656_170 Hb_003656_170 Hb_023386_050--Hb_003656_170 Hb_002324_050 Hb_002324_050 Hb_023386_050--Hb_002324_050 Hb_005000_050 Hb_005000_050 Hb_023386_050--Hb_005000_050 Hb_001123_170--Hb_003656_170 Hb_001377_130 Hb_001377_130 Hb_001123_170--Hb_001377_130 Hb_004544_090 Hb_004544_090 Hb_001123_170--Hb_004544_090 Hb_000382_030 Hb_000382_030 Hb_001123_170--Hb_000382_030 Hb_000477_110 Hb_000477_110 Hb_001123_170--Hb_000477_110 Hb_002078_250 Hb_002078_250 Hb_001123_170--Hb_002078_250 Hb_001522_040 Hb_001522_040 Hb_000100_210--Hb_001522_040 Hb_029748_020 Hb_029748_020 Hb_000100_210--Hb_029748_020 Hb_002833_020 Hb_002833_020 Hb_000100_210--Hb_002833_020 Hb_000997_340 Hb_000997_340 Hb_000100_210--Hb_000997_340 Hb_002686_210 Hb_002686_210 Hb_000100_210--Hb_002686_210 Hb_000366_050 Hb_000366_050 Hb_002375_060--Hb_000366_050 Hb_164926_050 Hb_164926_050 Hb_002375_060--Hb_164926_050 Hb_029576_010 Hb_029576_010 Hb_002375_060--Hb_029576_010 Hb_000836_320 Hb_000836_320 Hb_002375_060--Hb_000836_320 Hb_008021_010 Hb_008021_010 Hb_002375_060--Hb_008021_010 Hb_003656_170--Hb_002324_050 Hb_003656_170--Hb_002078_250 Hb_003964_010 Hb_003964_010 Hb_003656_170--Hb_003964_010 Hb_004306_140 Hb_004306_140 Hb_003656_170--Hb_004306_140 Hb_050236_010 Hb_050236_010 Hb_003656_170--Hb_050236_010 Hb_002324_040 Hb_002324_040 Hb_002324_050--Hb_002324_040 Hb_004032_250 Hb_004032_250 Hb_002324_050--Hb_004032_250 Hb_002324_050--Hb_003964_010 Hb_003025_150 Hb_003025_150 Hb_002324_050--Hb_003025_150 Hb_002324_050--Hb_001123_170 Hb_005375_070 Hb_005375_070 Hb_005000_050--Hb_005375_070 Hb_149484_010 Hb_149484_010 Hb_005000_050--Hb_149484_010 Hb_001951_240 Hb_001951_240 Hb_005000_050--Hb_001951_240 Hb_007574_050 Hb_007574_050 Hb_005000_050--Hb_007574_050 Hb_004712_160 Hb_004712_160 Hb_005000_050--Hb_004712_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.570075 20.391 10.705 12.2547 0.824668 1.45565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.510241 0 0.307436 8.41485 6.72646

CAGE analysis