Hb_023502_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig23502: 1715-2534
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa024232mg
description hypothetical protein
nr
ID XP_012077051.1
description PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
swissprot
ID Q39214
description Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1
trembl
ID A0A067LB31
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17219 PE=4 SV=1
Gene Ontology
ID GO:0043531
description nbs-containing resistance-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023502_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
2 Hb_000206_280 0.0027344174 - - Uncharacterized protein TCM_031897 [Theobroma cacao]
3 Hb_007235_040 0.0302955945 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_010028_010 0.0336827578 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
5 Hb_003938_150 0.0339518552 - - hypothetical protein JCGZ_17711 [Jatropha curcas]
6 Hb_007556_010 0.035587114 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X2 [Populus euphratica]
7 Hb_070850_010 0.036614933 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B-like [Jatropha curcas]
8 Hb_009230_050 0.0584746841 - - PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
9 Hb_008296_010 0.0638670872 - - -
10 Hb_085910_010 0.0652484853 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
11 Hb_001784_010 0.0653494379 - - nutrient reservoir, putative [Ricinus communis]
12 Hb_010615_010 0.0708461105 - - PREDICTED: reticuline oxidase-like protein [Jatropha curcas]
13 Hb_013862_010 0.0711201227 - - PREDICTED: uncharacterized protein LOC105650642 [Jatropha curcas]
14 Hb_000103_280 0.0761510387 transcription factor TF Family: HSF Heat shock factor protein HSF30, putative [Ricinus communis]
15 Hb_012753_100 0.07709482 - - conserved hypothetical protein [Ricinus communis]
16 Hb_021485_010 0.0875539621 - - Integrase-type DNA-binding superfamily protein, putative [Theobroma cacao]
17 Hb_008289_020 0.0880856641 - - PREDICTED: uncharacterized protein LOC105119066 [Populus euphratica]
18 Hb_004961_010 0.0890571248 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
19 Hb_015183_050 0.0988961542 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
20 Hb_023675_020 0.1006576181 - - acc synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_023502_010 Hb_023502_010 Hb_000206_280 Hb_000206_280 Hb_023502_010--Hb_000206_280 Hb_007235_040 Hb_007235_040 Hb_023502_010--Hb_007235_040 Hb_010028_010 Hb_010028_010 Hb_023502_010--Hb_010028_010 Hb_003938_150 Hb_003938_150 Hb_023502_010--Hb_003938_150 Hb_007556_010 Hb_007556_010 Hb_023502_010--Hb_007556_010 Hb_070850_010 Hb_070850_010 Hb_023502_010--Hb_070850_010 Hb_000206_280--Hb_007235_040 Hb_000206_280--Hb_010028_010 Hb_000206_280--Hb_003938_150 Hb_000206_280--Hb_007556_010 Hb_000206_280--Hb_070850_010 Hb_007235_040--Hb_010028_010 Hb_085910_010 Hb_085910_010 Hb_007235_040--Hb_085910_010 Hb_012753_100 Hb_012753_100 Hb_007235_040--Hb_012753_100 Hb_021485_010 Hb_021485_010 Hb_007235_040--Hb_021485_010 Hb_010028_010--Hb_085910_010 Hb_010028_010--Hb_012753_100 Hb_010028_010--Hb_021485_010 Hb_003938_150--Hb_007556_010 Hb_003938_150--Hb_070850_010 Hb_009230_050 Hb_009230_050 Hb_003938_150--Hb_009230_050 Hb_008296_010 Hb_008296_010 Hb_003938_150--Hb_008296_010 Hb_001784_010 Hb_001784_010 Hb_003938_150--Hb_001784_010 Hb_007556_010--Hb_070850_010 Hb_007556_010--Hb_009230_050 Hb_007556_010--Hb_008296_010 Hb_007556_010--Hb_001784_010 Hb_010615_010 Hb_010615_010 Hb_007556_010--Hb_010615_010 Hb_070850_010--Hb_009230_050 Hb_070850_010--Hb_008296_010 Hb_070850_010--Hb_001784_010 Hb_070850_010--Hb_010615_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.286829 0 0.112306 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis