Hb_023536_010

Information

Type transcription factor
Description TF Family: HB
Location Contig23536: 17301-22829
Sequence    

Annotation

kegg
ID rcu:RCOM_1435170
description homeobox protein knotted-1, putative
nr
ID XP_012089429.1
description PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
swissprot
ID Q9FP29
description Homeobox protein knotted-1-like 1 OS=Oryza sativa subsp. japonica GN=OSH6 PE=2 SV=1
trembl
ID B9RFJ2
description Homeobox protein knotted-1, putative OS=Ricinus communis GN=RCOM_1435170 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox protein knotted-1-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24634: 18985-22217 , PASA_asmbl_24635: 22498-22741
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023536_010 0.0 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
2 Hb_009493_010 0.1249373196 - - Minor allergen Alt a, putative [Ricinus communis]
3 Hb_010897_030 0.1414516499 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003893_090 0.1462499326 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
5 Hb_002798_060 0.1491400268 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
6 Hb_001329_210 0.1524892678 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
7 Hb_009486_190 0.1538714045 - - ATP binding protein, putative [Ricinus communis]
8 Hb_002909_070 0.1542079793 - - hypothetical protein POPTR_0006s03000g [Populus trichocarpa]
9 Hb_002540_030 0.159421437 - - hypothetical protein 32 [Hevea brasiliensis]
10 Hb_000635_140 0.1674662004 transcription factor TF Family: NF-YC DNA binding protein, putative [Ricinus communis]
11 Hb_007666_020 0.1686476512 - - alkaline phytoceramidase, putative [Ricinus communis]
12 Hb_029243_040 0.1711169053 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Populus euphratica]
13 Hb_000260_580 0.1755625098 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002909_060 0.176268803 - - 3-5 exonuclease, putative [Ricinus communis]
15 Hb_000905_200 0.1771407929 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
16 Hb_002600_100 0.1790651211 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
17 Hb_014720_080 0.1794668068 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
18 Hb_001278_050 0.1809541088 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
19 Hb_002471_160 0.1829746836 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4-like [Populus euphratica]
20 Hb_000196_090 0.1845961244 - - axonemal dynein light chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_023536_010 Hb_023536_010 Hb_009493_010 Hb_009493_010 Hb_023536_010--Hb_009493_010 Hb_010897_030 Hb_010897_030 Hb_023536_010--Hb_010897_030 Hb_003893_090 Hb_003893_090 Hb_023536_010--Hb_003893_090 Hb_002798_060 Hb_002798_060 Hb_023536_010--Hb_002798_060 Hb_001329_210 Hb_001329_210 Hb_023536_010--Hb_001329_210 Hb_009486_190 Hb_009486_190 Hb_023536_010--Hb_009486_190 Hb_009493_010--Hb_010897_030 Hb_002909_060 Hb_002909_060 Hb_009493_010--Hb_002909_060 Hb_002600_100 Hb_002600_100 Hb_009493_010--Hb_002600_100 Hb_009493_010--Hb_003893_090 Hb_000635_140 Hb_000635_140 Hb_009493_010--Hb_000635_140 Hb_010897_030--Hb_000635_140 Hb_002603_060 Hb_002603_060 Hb_010897_030--Hb_002603_060 Hb_001123_210 Hb_001123_210 Hb_010897_030--Hb_001123_210 Hb_029904_040 Hb_029904_040 Hb_010897_030--Hb_029904_040 Hb_000896_120 Hb_000896_120 Hb_010897_030--Hb_000896_120 Hb_014720_080 Hb_014720_080 Hb_003893_090--Hb_014720_080 Hb_002909_070 Hb_002909_070 Hb_003893_090--Hb_002909_070 Hb_002540_030 Hb_002540_030 Hb_003893_090--Hb_002540_030 Hb_003125_150 Hb_003125_150 Hb_003893_090--Hb_003125_150 Hb_000815_260 Hb_000815_260 Hb_003893_090--Hb_000815_260 Hb_002182_060 Hb_002182_060 Hb_003893_090--Hb_002182_060 Hb_004607_150 Hb_004607_150 Hb_002798_060--Hb_004607_150 Hb_002798_060--Hb_009486_190 Hb_008959_030 Hb_008959_030 Hb_002798_060--Hb_008959_030 Hb_004012_010 Hb_004012_010 Hb_002798_060--Hb_004012_010 Hb_000599_140 Hb_000599_140 Hb_002798_060--Hb_000599_140 Hb_001278_050 Hb_001278_050 Hb_001329_210--Hb_001278_050 Hb_001935_030 Hb_001935_030 Hb_001329_210--Hb_001935_030 Hb_002078_460 Hb_002078_460 Hb_001329_210--Hb_002078_460 Hb_007382_150 Hb_007382_150 Hb_001329_210--Hb_007382_150 Hb_001329_210--Hb_002540_030 Hb_007666_020 Hb_007666_020 Hb_001329_210--Hb_007666_020 Hb_000196_090 Hb_000196_090 Hb_009486_190--Hb_000196_090 Hb_016604_020 Hb_016604_020 Hb_009486_190--Hb_016604_020 Hb_033772_050 Hb_033772_050 Hb_009486_190--Hb_033772_050 Hb_009486_190--Hb_002540_030 Hb_002609_280 Hb_002609_280 Hb_009486_190--Hb_002609_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.8718 19.899 0.582738 14.8719 6.7949 14.7466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.4906 40.0584 37.1317 12.1235 0.163048

CAGE analysis