Hb_023536_020

Information

Type -
Description -
Location Contig23536: 25501-26466
Sequence    

Annotation

kegg
ID rcu:RCOM_1435160
description Nicotianamine synthase, putative (EC:2.5.1.43)
nr
ID XP_002512510.1
description Nicotianamine synthase, putative [Ricinus communis]
swissprot
ID Q9XGI7
description Nicotianamine synthase OS=Solanum lycopersicum GN=CHLN PE=2 SV=1
trembl
ID B9RFJ1
description Nicotianamine synthase, putative OS=Ricinus communis GN=RCOM_1435160 PE=4 SV=1
Gene Ontology
ID GO:0030410
description nicotianamine synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023536_020 0.0 - - Nicotianamine synthase, putative [Ricinus communis]
2 Hb_174644_010 0.0625771182 - - -
3 Hb_002411_070 0.0654356308 - - PREDICTED: WAT1-related protein At5g07050 [Jatropha curcas]
4 Hb_000373_110 0.0720643536 - - Nodulin, putative [Ricinus communis]
5 Hb_002374_070 0.0763328276 - - amino acid transporter, putative [Ricinus communis]
6 Hb_003839_060 0.0768063624 - - PREDICTED: BURP domain-containing protein 11-like [Gossypium raimondii]
7 Hb_000433_060 0.0837073139 - - hypothetical protein EUGRSUZ_B00708, partial [Eucalyptus grandis]
8 Hb_004125_080 0.0843814512 - - PREDICTED: dCTP pyrophosphatase 1-like [Populus euphratica]
9 Hb_005695_050 0.0975581644 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
10 Hb_006590_040 0.0989623079 - - amino acid permease, putative [Ricinus communis]
11 Hb_168031_010 0.1019087306 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6 [Jatropha curcas]
12 Hb_001104_250 0.1042005991 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Ricinus communis]
13 Hb_008200_010 0.106751904 - - PREDICTED: ABC transporter G family member 14-like isoform X1 [Jatropha curcas]
14 Hb_002116_020 0.1100973941 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
15 Hb_000769_050 0.1127897078 - - hypothetical protein CISIN_1g030637mg [Citrus sinensis]
16 Hb_003442_020 0.1142686484 - - ccd1, putative [Ricinus communis]
17 Hb_000172_260 0.1150882136 - - PREDICTED: low affinity sulfate transporter 3 [Jatropha curcas]
18 Hb_123887_010 0.1165166087 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
19 Hb_000056_180 0.1244416289 - - -
20 Hb_031022_040 0.1246532091 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_023536_020 Hb_023536_020 Hb_174644_010 Hb_174644_010 Hb_023536_020--Hb_174644_010 Hb_002411_070 Hb_002411_070 Hb_023536_020--Hb_002411_070 Hb_000373_110 Hb_000373_110 Hb_023536_020--Hb_000373_110 Hb_002374_070 Hb_002374_070 Hb_023536_020--Hb_002374_070 Hb_003839_060 Hb_003839_060 Hb_023536_020--Hb_003839_060 Hb_000433_060 Hb_000433_060 Hb_023536_020--Hb_000433_060 Hb_174644_010--Hb_003839_060 Hb_174644_010--Hb_000433_060 Hb_000172_260 Hb_000172_260 Hb_174644_010--Hb_000172_260 Hb_000164_250 Hb_000164_250 Hb_174644_010--Hb_000164_250 Hb_003442_020 Hb_003442_020 Hb_174644_010--Hb_003442_020 Hb_004125_080 Hb_004125_080 Hb_002411_070--Hb_004125_080 Hb_002411_070--Hb_000373_110 Hb_006590_040 Hb_006590_040 Hb_002411_070--Hb_006590_040 Hb_002411_070--Hb_002374_070 Hb_002116_020 Hb_002116_020 Hb_002411_070--Hb_002116_020 Hb_168031_010 Hb_168031_010 Hb_000373_110--Hb_168031_010 Hb_000373_110--Hb_004125_080 Hb_000373_110--Hb_002116_020 Hb_000373_110--Hb_000433_060 Hb_002374_070--Hb_004125_080 Hb_008200_010 Hb_008200_010 Hb_002374_070--Hb_008200_010 Hb_002374_070--Hb_006590_040 Hb_002374_070--Hb_002116_020 Hb_003839_060--Hb_003442_020 Hb_001104_250 Hb_001104_250 Hb_003839_060--Hb_001104_250 Hb_123887_010 Hb_123887_010 Hb_003839_060--Hb_123887_010 Hb_003777_100 Hb_003777_100 Hb_003839_060--Hb_003777_100 Hb_031022_040 Hb_031022_040 Hb_000433_060--Hb_031022_040 Hb_014214_010 Hb_014214_010 Hb_000433_060--Hb_014214_010 Hb_000903_050 Hb_000903_050 Hb_000433_060--Hb_000903_050 Hb_005306_200 Hb_005306_200 Hb_000433_060--Hb_005306_200 Hb_001808_010 Hb_001808_010 Hb_000433_060--Hb_001808_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0230903 15.9001 1.34918 40.4945 0.0216449 0.183149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.169846

CAGE analysis