Hb_023610_010

Information

Type -
Description -
Location Contig23610: 1938-8900
Sequence    

Annotation

kegg
ID rcu:RCOM_0189850
description hypothetical protein
nr
ID XP_002531967.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID A0A0D9Y3E4
description Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24750: 7545-8716 , PASA_asmbl_24751: 7542-8716 , PASA_asmbl_24752: 2391-8716 , PASA_asmbl_24753: 2389-8698
cDNA
(Sanger)
(ID:Location)		 014_H19.ab1: 7565-8380 , 017_E15.ab1: 7650-8032 , 019_F21.ab1: 7547-8482 , 019_H18.ab1: 3607-8629 , 024_N22.ab1: 5961-8462 , 027_M04.ab1: 7547-8478 , 027_N04.ab1: 7565-8416 , 027_N17.ab1: 7547-8260 , 035_K17.ab1: 7547-8397 , 042_B20.ab1: 7547-8422

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023610_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000300_530 0.1131262934 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
3 Hb_004884_060 0.1374118813 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
4 Hb_003125_050 0.1404015779 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
5 Hb_098315_110 0.1430088868 - - conserved hypothetical protein [Ricinus communis]
6 Hb_095397_010 0.1434424741 - - hypothetical protein 25 [Hevea brasiliensis]
7 Hb_004156_060 0.1441235583 - - neutral/alkaline invertase 1 [Hevea brasiliensis]
8 Hb_003906_120 0.1479743007 - - -
9 Hb_003906_110 0.1520100292 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]
10 Hb_000249_110 0.1552485123 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
11 Hb_001102_110 0.1563192233 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1-like [Jatropha curcas]
12 Hb_002232_180 0.1574645346 - - PREDICTED: DUF21 domain-containing protein At2g14520-like isoform X1 [Populus euphratica]
13 Hb_002843_160 0.1581036817 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Jatropha curcas]
14 Hb_154381_050 0.165231094 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002989_080 0.1665497761 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
16 Hb_007178_010 0.1679079184 - - pseudo-hevein [Hevea brasiliensis]
17 Hb_001268_230 0.169773713 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
18 Hb_011021_030 0.1707825198 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
19 Hb_000483_370 0.1720079394 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002172_030 0.1722228262 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_023610_010 Hb_023610_010 Hb_000300_530 Hb_000300_530 Hb_023610_010--Hb_000300_530 Hb_004884_060 Hb_004884_060 Hb_023610_010--Hb_004884_060 Hb_003125_050 Hb_003125_050 Hb_023610_010--Hb_003125_050 Hb_098315_110 Hb_098315_110 Hb_023610_010--Hb_098315_110 Hb_095397_010 Hb_095397_010 Hb_023610_010--Hb_095397_010 Hb_004156_060 Hb_004156_060 Hb_023610_010--Hb_004156_060 Hb_000300_530--Hb_098315_110 Hb_000300_530--Hb_003125_050 Hb_012654_020 Hb_012654_020 Hb_000300_530--Hb_012654_020 Hb_011021_030 Hb_011021_030 Hb_000300_530--Hb_011021_030 Hb_154381_050 Hb_154381_050 Hb_000300_530--Hb_154381_050 Hb_003906_110 Hb_003906_110 Hb_004884_060--Hb_003906_110 Hb_000249_110 Hb_000249_110 Hb_004884_060--Hb_000249_110 Hb_000907_100 Hb_000907_100 Hb_004884_060--Hb_000907_100 Hb_002989_080 Hb_002989_080 Hb_004884_060--Hb_002989_080 Hb_007178_010 Hb_007178_010 Hb_004884_060--Hb_007178_010 Hb_002843_160 Hb_002843_160 Hb_004884_060--Hb_002843_160 Hb_003125_050--Hb_000249_110 Hb_005657_010 Hb_005657_010 Hb_003125_050--Hb_005657_010 Hb_003906_120 Hb_003906_120 Hb_003125_050--Hb_003906_120 Hb_001767_010 Hb_001767_010 Hb_003125_050--Hb_001767_010 Hb_001268_230 Hb_001268_230 Hb_098315_110--Hb_001268_230 Hb_004648_040 Hb_004648_040 Hb_098315_110--Hb_004648_040 Hb_000317_080 Hb_000317_080 Hb_098315_110--Hb_000317_080 Hb_130177_010 Hb_130177_010 Hb_098315_110--Hb_130177_010 Hb_006029_010 Hb_006029_010 Hb_098315_110--Hb_006029_010 Hb_007810_040 Hb_007810_040 Hb_095397_010--Hb_007810_040 Hb_095397_010--Hb_003906_120 Hb_003304_080 Hb_003304_080 Hb_095397_010--Hb_003304_080 Hb_002232_180 Hb_002232_180 Hb_095397_010--Hb_002232_180 Hb_000050_120 Hb_000050_120 Hb_095397_010--Hb_000050_120 Hb_043637_010 Hb_043637_010 Hb_095397_010--Hb_043637_010 Hb_004156_060--Hb_154381_050 Hb_000208_290 Hb_000208_290 Hb_004156_060--Hb_000208_290 Hb_004156_060--Hb_006029_010 Hb_000230_110 Hb_000230_110 Hb_004156_060--Hb_000230_110 Hb_176022_020 Hb_176022_020 Hb_004156_060--Hb_176022_020 Hb_012055_020 Hb_012055_020 Hb_004156_060--Hb_012055_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
506.883 12.3577 4.07141 14.8633 597.323 334.408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
84.9755 96.2719 352.157 57.6789 5.88987

CAGE analysis