Hb_023640_020

Information

Type -
Description -
Location Contig23640: 29633-31380
Sequence    

Annotation

kegg
ID rcu:RCOM_1711490
description hypothetical protein
nr
ID XP_002524154.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SDT5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1711490 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24756: 29517-31413
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023640_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000160_190 0.0610525565 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
3 Hb_004128_150 0.0676651313 - - hypothetical protein POPTR_0016s08360g [Populus trichocarpa]
4 Hb_004007_050 0.0683291064 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT [Jatropha curcas]
5 Hb_004137_110 0.0839398567 - - PREDICTED: probable auxin efflux carrier component 6 [Jatropha curcas]
6 Hb_000139_040 0.0845483507 - - spermine synthase, putative [Ricinus communis]
7 Hb_005977_080 0.0848352062 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
8 Hb_000031_240 0.0856021405 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
9 Hb_011310_170 0.0871271943 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
10 Hb_049846_010 0.0886419429 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
11 Hb_001958_040 0.0906035829 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
12 Hb_001301_310 0.0964399034 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004453_160 0.099699127 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001349_050 0.1030447755 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
15 Hb_005357_140 0.104478021 - - Xyloglucan endotransglucosylase/hydrolase protein A precursor, putative [Ricinus communis]
16 Hb_002894_060 0.1045993479 - - respiratory burst oxidase D [Manihot esculenta]
17 Hb_000397_060 0.1080806858 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
18 Hb_019516_010 0.108337975 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
19 Hb_000331_170 0.1145701398 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
20 Hb_006614_020 0.1150634845 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_023640_020 Hb_023640_020 Hb_000160_190 Hb_000160_190 Hb_023640_020--Hb_000160_190 Hb_004128_150 Hb_004128_150 Hb_023640_020--Hb_004128_150 Hb_004007_050 Hb_004007_050 Hb_023640_020--Hb_004007_050 Hb_004137_110 Hb_004137_110 Hb_023640_020--Hb_004137_110 Hb_000139_040 Hb_000139_040 Hb_023640_020--Hb_000139_040 Hb_005977_080 Hb_005977_080 Hb_023640_020--Hb_005977_080 Hb_049846_010 Hb_049846_010 Hb_000160_190--Hb_049846_010 Hb_000160_190--Hb_005977_080 Hb_029262_010 Hb_029262_010 Hb_000160_190--Hb_029262_010 Hb_000160_190--Hb_004137_110 Hb_000160_190--Hb_004128_150 Hb_004128_150--Hb_004007_050 Hb_006614_020 Hb_006614_020 Hb_004128_150--Hb_006614_020 Hb_011310_170 Hb_011310_170 Hb_004128_150--Hb_011310_170 Hb_001958_040 Hb_001958_040 Hb_004128_150--Hb_001958_040 Hb_004453_160 Hb_004453_160 Hb_004128_150--Hb_004453_160 Hb_004007_050--Hb_004453_160 Hb_004007_050--Hb_001958_040 Hb_000031_240 Hb_000031_240 Hb_004007_050--Hb_000031_240 Hb_004007_050--Hb_011310_170 Hb_004137_110--Hb_005977_080 Hb_010449_010 Hb_010449_010 Hb_004137_110--Hb_010449_010 Hb_000103_220 Hb_000103_220 Hb_004137_110--Hb_000103_220 Hb_000441_130 Hb_000441_130 Hb_004137_110--Hb_000441_130 Hb_017434_010 Hb_017434_010 Hb_004137_110--Hb_017434_010 Hb_000139_040--Hb_049846_010 Hb_001258_130 Hb_001258_130 Hb_000139_040--Hb_001258_130 Hb_129956_010 Hb_129956_010 Hb_000139_040--Hb_129956_010 Hb_000139_040--Hb_000031_240 Hb_005357_140 Hb_005357_140 Hb_000139_040--Hb_005357_140 Hb_005977_080--Hb_000031_240 Hb_003207_120 Hb_003207_120 Hb_005977_080--Hb_003207_120 Hb_000331_170 Hb_000331_170 Hb_005977_080--Hb_000331_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.136827 1.72958 24.5664 16.4275 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0301941 6.05869

CAGE analysis