Hb_023711_010

Information

Type -
Description -
Location Contig23711: 14281-15229
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24808: 14533-15902 , PASA_asmbl_24809: 15069-15356
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023711_010 0.0 - - -
2 Hb_000175_320 0.118091525 - - PREDICTED: formin-like protein 14 [Jatropha curcas]
3 Hb_000753_190 0.1259690568 - - PREDICTED: D-aminoacyl-tRNA deacylase [Populus euphratica]
4 Hb_001301_050 0.1355713148 - - -
5 Hb_086639_090 0.1389026006 - - 60S ribosomal protein L7a, putative [Ricinus communis]
6 Hb_000184_100 0.1439415974 - - IMP dehydrogenase/GMP reductase [Hevea brasiliensis]
7 Hb_000599_280 0.1442891834 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
8 Hb_003638_070 0.1475473467 - - hypothetical protein EUGRSUZ_E00638 [Eucalyptus grandis]
9 Hb_000834_030 0.1479754035 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
10 Hb_000676_160 0.1481826634 - - folate carrier protein, putative [Ricinus communis]
11 Hb_011377_020 0.1504431524 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
12 Hb_033153_060 0.1507483327 - - Transcription elongation factor, putative [Ricinus communis]
13 Hb_003623_050 0.1541528175 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004800_120 0.1544703136 - - PREDICTED: maf-like protein DDB_G0281937 isoform X1 [Jatropha curcas]
15 Hb_003327_050 0.154938638 - - surfeit locus protein, putative [Ricinus communis]
16 Hb_002687_170 0.1551157131 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
17 Hb_007065_010 0.1571876749 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
18 Hb_012490_050 0.1586335842 - - PREDICTED: uncharacterized protein LOC105637921 [Jatropha curcas]
19 Hb_007290_080 0.1594620871 - - hypothetical protein CISIN_1g047098mg [Citrus sinensis]
20 Hb_003777_210 0.1599432599 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_023711_010 Hb_023711_010 Hb_000175_320 Hb_000175_320 Hb_023711_010--Hb_000175_320 Hb_000753_190 Hb_000753_190 Hb_023711_010--Hb_000753_190 Hb_001301_050 Hb_001301_050 Hb_023711_010--Hb_001301_050 Hb_086639_090 Hb_086639_090 Hb_023711_010--Hb_086639_090 Hb_000184_100 Hb_000184_100 Hb_023711_010--Hb_000184_100 Hb_000599_280 Hb_000599_280 Hb_023711_010--Hb_000599_280 Hb_003638_070 Hb_003638_070 Hb_000175_320--Hb_003638_070 Hb_000203_020 Hb_000203_020 Hb_000175_320--Hb_000203_020 Hb_003038_190 Hb_003038_190 Hb_000175_320--Hb_003038_190 Hb_002006_130 Hb_002006_130 Hb_000175_320--Hb_002006_130 Hb_000265_050 Hb_000265_050 Hb_000175_320--Hb_000265_050 Hb_000753_190--Hb_003638_070 Hb_007290_080 Hb_007290_080 Hb_000753_190--Hb_007290_080 Hb_000010_260 Hb_000010_260 Hb_000753_190--Hb_000010_260 Hb_000329_020 Hb_000329_020 Hb_000753_190--Hb_000329_020 Hb_001387_020 Hb_001387_020 Hb_000753_190--Hb_001387_020 Hb_003494_050 Hb_003494_050 Hb_001301_050--Hb_003494_050 Hb_006573_020 Hb_006573_020 Hb_001301_050--Hb_006573_020 Hb_024758_010 Hb_024758_010 Hb_001301_050--Hb_024758_010 Hb_001635_130 Hb_001635_130 Hb_001301_050--Hb_001635_130 Hb_000302_280 Hb_000302_280 Hb_001301_050--Hb_000302_280 Hb_000134_070 Hb_000134_070 Hb_086639_090--Hb_000134_070 Hb_000676_160 Hb_000676_160 Hb_086639_090--Hb_000676_160 Hb_000136_170 Hb_000136_170 Hb_086639_090--Hb_000136_170 Hb_004543_040 Hb_004543_040 Hb_086639_090--Hb_004543_040 Hb_006541_010 Hb_006541_010 Hb_086639_090--Hb_006541_010 Hb_004567_120 Hb_004567_120 Hb_086639_090--Hb_004567_120 Hb_001789_130 Hb_001789_130 Hb_000184_100--Hb_001789_130 Hb_004800_120 Hb_004800_120 Hb_000184_100--Hb_004800_120 Hb_004976_070 Hb_004976_070 Hb_000184_100--Hb_004976_070 Hb_000347_330 Hb_000347_330 Hb_000184_100--Hb_000347_330 Hb_000184_100--Hb_007290_080 Hb_011377_020 Hb_011377_020 Hb_000599_280--Hb_011377_020 Hb_000270_720 Hb_000270_720 Hb_000599_280--Hb_000270_720 Hb_004007_180 Hb_004007_180 Hb_000599_280--Hb_004007_180 Hb_000454_180 Hb_000454_180 Hb_000599_280--Hb_000454_180 Hb_002391_220 Hb_002391_220 Hb_000599_280--Hb_002391_220 Hb_000172_420 Hb_000172_420 Hb_000599_280--Hb_000172_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.49859 1.64123 1.60799 4.75561 2.2154 6.94809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3456 24.0866 3.80929 6.31048 8.83659

CAGE analysis