Hb_023732_030

Information

Type -
Description -
Location Contig23732: 38256-42127
Sequence    

Annotation

kegg
ID rcu:RCOM_0791900
description multidrug resistance pump, putative
nr
ID XP_012066823.1
description PREDICTED: proteinaceous RNase P 2-like isoform X2 [Jatropha curcas]
swissprot
ID F4JKB6
description Proteinaceous RNase P 3 OS=Arabidopsis thaliana GN=PRORP3 PE=1 SV=1
trembl
ID A0A067L562
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01939 PE=4 SV=1
Gene Ontology
ID GO:0008152
description proteinaceous rnase p 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24813: 39406-40858 , PASA_asmbl_24814: 39544-39859 , PASA_asmbl_24815: 40897-41559 , PASA_asmbl_24816: 41785-41955
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023732_030 0.0 - - PREDICTED: proteinaceous RNase P 2-like isoform X2 [Jatropha curcas]
2 Hb_003376_330 0.0694612115 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
3 Hb_073973_100 0.0712699851 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
4 Hb_000556_120 0.0722961706 - - Spastin, putative [Ricinus communis]
5 Hb_000907_110 0.0752198878 - - dihydroxyacetone kinase family protein [Populus trichocarpa]
6 Hb_000431_170 0.0768076048 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
7 Hb_002197_050 0.0779939629 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
8 Hb_006570_080 0.0783114391 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
9 Hb_003994_230 0.0784579063 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
10 Hb_001252_120 0.0800940606 - - PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
11 Hb_001357_250 0.0804291647 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
12 Hb_031340_050 0.0812124648 - - PREDICTED: tropinone reductase 1-like isoform X1 [Jatropha curcas]
13 Hb_006831_140 0.0835200393 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
14 Hb_123915_040 0.0840165639 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
15 Hb_002936_010 0.0844106845 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
16 Hb_001318_280 0.0848357265 - - Protein FAM18B, putative [Ricinus communis]
17 Hb_000468_060 0.0852313127 - - ku P70 DNA helicase, putative [Ricinus communis]
18 Hb_001575_090 0.085462486 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
19 Hb_000460_030 0.086034276 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
20 Hb_000903_060 0.0861678918 - - PREDICTED: ras-related protein RABA5e [Jatropha curcas]

Gene co-expression network

sample Hb_023732_030 Hb_023732_030 Hb_003376_330 Hb_003376_330 Hb_023732_030--Hb_003376_330 Hb_073973_100 Hb_073973_100 Hb_023732_030--Hb_073973_100 Hb_000556_120 Hb_000556_120 Hb_023732_030--Hb_000556_120 Hb_000907_110 Hb_000907_110 Hb_023732_030--Hb_000907_110 Hb_000431_170 Hb_000431_170 Hb_023732_030--Hb_000431_170 Hb_002197_050 Hb_002197_050 Hb_023732_030--Hb_002197_050 Hb_000270_490 Hb_000270_490 Hb_003376_330--Hb_000270_490 Hb_003376_330--Hb_073973_100 Hb_002232_410 Hb_002232_410 Hb_003376_330--Hb_002232_410 Hb_026198_070 Hb_026198_070 Hb_003376_330--Hb_026198_070 Hb_003693_070 Hb_003693_070 Hb_003376_330--Hb_003693_070 Hb_073973_100--Hb_000270_490 Hb_073973_100--Hb_000556_120 Hb_002000_080 Hb_002000_080 Hb_073973_100--Hb_002000_080 Hb_165928_030 Hb_165928_030 Hb_073973_100--Hb_165928_030 Hb_005634_010 Hb_005634_010 Hb_000556_120--Hb_005634_010 Hb_000329_060 Hb_000329_060 Hb_000556_120--Hb_000329_060 Hb_000140_290 Hb_000140_290 Hb_000556_120--Hb_000140_290 Hb_001876_050 Hb_001876_050 Hb_000556_120--Hb_001876_050 Hb_004324_130 Hb_004324_130 Hb_000556_120--Hb_004324_130 Hb_001252_120 Hb_001252_120 Hb_000556_120--Hb_001252_120 Hb_000181_400 Hb_000181_400 Hb_000907_110--Hb_000181_400 Hb_033642_090 Hb_033642_090 Hb_000907_110--Hb_033642_090 Hb_001357_250 Hb_001357_250 Hb_000907_110--Hb_001357_250 Hb_028285_010 Hb_028285_010 Hb_000907_110--Hb_028285_010 Hb_000907_110--Hb_004324_130 Hb_000130_410 Hb_000130_410 Hb_000907_110--Hb_000130_410 Hb_000948_160 Hb_000948_160 Hb_000431_170--Hb_000948_160 Hb_006693_020 Hb_006693_020 Hb_000431_170--Hb_006693_020 Hb_000081_160 Hb_000081_160 Hb_000431_170--Hb_000081_160 Hb_000460_030 Hb_000460_030 Hb_000431_170--Hb_000460_030 Hb_000390_300 Hb_000390_300 Hb_000431_170--Hb_000390_300 Hb_010098_050 Hb_010098_050 Hb_000431_170--Hb_010098_050 Hb_000137_090 Hb_000137_090 Hb_002197_050--Hb_000137_090 Hb_002197_050--Hb_000948_160 Hb_002197_050--Hb_000431_170 Hb_000003_320 Hb_000003_320 Hb_002197_050--Hb_000003_320 Hb_000312_080 Hb_000312_080 Hb_002197_050--Hb_000312_080 Hb_031340_050 Hb_031340_050 Hb_002197_050--Hb_031340_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.16954 4.55566 5.94792 7.20734 6.58573 6.12706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.32554 7.41748 6.40461 9.38182 4.13781

CAGE analysis