Hb_023732_050

Information

Type -
Description -
Location Contig23732: 63155-66354
Sequence    

Annotation

kegg
ID rcu:RCOM_0792540
description aldo-keto reductase, putative
nr
ID XP_002529061.1
description aldo-keto reductase, putative [Ricinus communis]
swissprot
ID Q27YU7
description Flagellar radial spoke protein 5 OS=Chlamydomonas reinhardtii GN=RSP5 PE=1 SV=1
trembl
ID B9SSU2
description Aldo-keto reductase, putative OS=Ricinus communis GN=RCOM_0792540 PE=4 SV=1
Gene Ontology
ID GO:0009505
description aryl-alcohol dehydrogenase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24818: 63182-66471
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023732_050 0.0 - - aldo-keto reductase, putative [Ricinus communis]
2 Hb_007694_060 0.1127565144 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
3 Hb_011114_020 0.1224110393 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
4 Hb_006620_070 0.1260668 - - chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
5 Hb_004459_060 0.1268612699 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]
6 Hb_003038_100 0.1308653466 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
7 Hb_001405_090 0.1310157797 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Jatropha curcas]
8 Hb_000368_120 0.136179227 - - PREDICTED: uncharacterized protein LOC105633862 [Jatropha curcas]
9 Hb_012545_040 0.1426658524 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000005_130 0.1453393943 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
11 Hb_007426_170 0.1478965967 transcription factor TF Family: TCP -
12 Hb_000442_070 0.1521991899 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
13 Hb_000627_300 0.1562616237 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
14 Hb_002150_130 0.1575943201 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
15 Hb_000000_180 0.1592920992 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
16 Hb_001124_190 0.1602019066 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001519_170 0.161664174 - - PREDICTED: K(+) efflux antiporter 3, chloroplastic [Jatropha curcas]
18 Hb_000042_290 0.1625335187 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
19 Hb_005488_160 0.163625817 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
20 Hb_000431_150 0.1642919097 - - ribosomal protein L27, putative [Ricinus communis]

Gene co-expression network

sample Hb_023732_050 Hb_023732_050 Hb_007694_060 Hb_007694_060 Hb_023732_050--Hb_007694_060 Hb_011114_020 Hb_011114_020 Hb_023732_050--Hb_011114_020 Hb_006620_070 Hb_006620_070 Hb_023732_050--Hb_006620_070 Hb_004459_060 Hb_004459_060 Hb_023732_050--Hb_004459_060 Hb_003038_100 Hb_003038_100 Hb_023732_050--Hb_003038_100 Hb_001405_090 Hb_001405_090 Hb_023732_050--Hb_001405_090 Hb_007694_060--Hb_004459_060 Hb_000005_130 Hb_000005_130 Hb_007694_060--Hb_000005_130 Hb_007694_060--Hb_006620_070 Hb_005488_160 Hb_005488_160 Hb_007694_060--Hb_005488_160 Hb_007694_060--Hb_001405_090 Hb_000368_120 Hb_000368_120 Hb_011114_020--Hb_000368_120 Hb_002411_100 Hb_002411_100 Hb_011114_020--Hb_002411_100 Hb_011114_020--Hb_000005_130 Hb_000442_070 Hb_000442_070 Hb_011114_020--Hb_000442_070 Hb_011114_020--Hb_006620_070 Hb_000146_030 Hb_000146_030 Hb_011114_020--Hb_000146_030 Hb_006620_070--Hb_004459_060 Hb_006620_070--Hb_001405_090 Hb_006620_070--Hb_000005_130 Hb_006620_070--Hb_002411_100 Hb_006620_070--Hb_000442_070 Hb_004459_060--Hb_000146_030 Hb_004459_060--Hb_002411_100 Hb_012545_040 Hb_012545_040 Hb_004459_060--Hb_012545_040 Hb_004459_060--Hb_000005_130 Hb_027472_100 Hb_027472_100 Hb_003038_100--Hb_027472_100 Hb_003038_100--Hb_000005_130 Hb_003038_100--Hb_011114_020 Hb_005914_050 Hb_005914_050 Hb_003038_100--Hb_005914_050 Hb_002150_130 Hb_002150_130 Hb_003038_100--Hb_002150_130 Hb_004117_040 Hb_004117_040 Hb_003038_100--Hb_004117_040 Hb_001405_090--Hb_004459_060 Hb_001405_090--Hb_000442_070 Hb_001405_090--Hb_011114_020 Hb_000206_170 Hb_000206_170 Hb_001405_090--Hb_000206_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.9732 2.51614 41.5277 8.63369 2.50752 1.49058
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.52873 16.6987 6.09784 1.45608 42.5199

CAGE analysis