Hb_023732_090

Information

Type -
Description -
Location Contig23732: 82053-84819
Sequence    

Annotation

kegg
ID rcu:RCOM_0792840
description WD-repeat protein, putative (EC:5.2.1.8)
nr
ID XP_002529071.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q8W4D0
description Peptidyl-prolyl cis-trans isomerase CYP71 OS=Arabidopsis thaliana GN=CYP71 PE=1 SV=1
trembl
ID B9SSV2
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0792840 PE=4 SV=1
Gene Ontology
ID GO:0005488
description peptidylprolyl isomerase domain and wd repeat-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24824: 83762-84016
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023732_090 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_005016_050 0.0939341855 - - -
3 Hb_000748_080 0.1175278666 - - hypothetical protein OsI_28173 [Oryza sativa Indica Group]
4 Hb_005389_150 0.1240975892 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010423_040 0.1261507587 - - hypothetical protein JCGZ_17463 [Jatropha curcas]
6 Hb_012799_130 0.1292372743 - - PREDICTED: flap endonuclease GEN-like 2 [Jatropha curcas]
7 Hb_012490_030 0.1313013973 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
8 Hb_003333_060 0.1381893035 - - PREDICTED: uncharacterized protein LOC105628461 [Jatropha curcas]
9 Hb_000567_030 0.1387874098 - - hypothetical protein JCGZ_21550 [Jatropha curcas]
10 Hb_000086_380 0.1389818374 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
11 Hb_003912_090 0.1401845924 - - peptidyl-tRNA hydrolase, putative [Ricinus communis]
12 Hb_008406_190 0.1408211763 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
13 Hb_000927_020 0.1418560826 - - synaptosomal associated protein, putative [Ricinus communis]
14 Hb_003011_040 0.1420371069 - - PREDICTED: uncharacterized protein LOC102629536 isoform X2 [Citrus sinensis]
15 Hb_005615_080 0.1420585037 - - PREDICTED: uncharacterized protein LOC105649609 [Jatropha curcas]
16 Hb_002027_070 0.1421002639 - - Auxin-binding protein T85 precursor, putative [Ricinus communis]
17 Hb_003747_060 0.1435907991 - - PREDICTED: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2 isoform X2 [Cucumis sativus]
18 Hb_002596_040 0.1443766832 - - PREDICTED: uncharacterized protein LOC105645264 isoform X2 [Jatropha curcas]
19 Hb_004970_110 0.1449583755 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
20 Hb_000795_060 0.1461425202 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase acetyl-CoA C-acetyltransferase [Hevea brasiliensis]

Gene co-expression network

sample Hb_023732_090 Hb_023732_090 Hb_005016_050 Hb_005016_050 Hb_023732_090--Hb_005016_050 Hb_000748_080 Hb_000748_080 Hb_023732_090--Hb_000748_080 Hb_005389_150 Hb_005389_150 Hb_023732_090--Hb_005389_150 Hb_010423_040 Hb_010423_040 Hb_023732_090--Hb_010423_040 Hb_012799_130 Hb_012799_130 Hb_023732_090--Hb_012799_130 Hb_012490_030 Hb_012490_030 Hb_023732_090--Hb_012490_030 Hb_009117_030 Hb_009117_030 Hb_005016_050--Hb_009117_030 Hb_027472_150 Hb_027472_150 Hb_005016_050--Hb_027472_150 Hb_003912_090 Hb_003912_090 Hb_005016_050--Hb_003912_090 Hb_003333_060 Hb_003333_060 Hb_005016_050--Hb_003333_060 Hb_000193_270 Hb_000193_270 Hb_005016_050--Hb_000193_270 Hb_006157_020 Hb_006157_020 Hb_000748_080--Hb_006157_020 Hb_007017_090 Hb_007017_090 Hb_000748_080--Hb_007017_090 Hb_000086_380 Hb_000086_380 Hb_000748_080--Hb_000086_380 Hb_000748_080--Hb_012490_030 Hb_001579_320 Hb_001579_320 Hb_000748_080--Hb_001579_320 Hb_111198_020 Hb_111198_020 Hb_000748_080--Hb_111198_020 Hb_003266_050 Hb_003266_050 Hb_005389_150--Hb_003266_050 Hb_001009_040 Hb_001009_040 Hb_005389_150--Hb_001009_040 Hb_000169_010 Hb_000169_010 Hb_005389_150--Hb_000169_010 Hb_003011_040 Hb_003011_040 Hb_005389_150--Hb_003011_040 Hb_001269_320 Hb_001269_320 Hb_005389_150--Hb_001269_320 Hb_010691_060 Hb_010691_060 Hb_005389_150--Hb_010691_060 Hb_008406_190 Hb_008406_190 Hb_010423_040--Hb_008406_190 Hb_010423_040--Hb_003333_060 Hb_002296_040 Hb_002296_040 Hb_010423_040--Hb_002296_040 Hb_005615_080 Hb_005615_080 Hb_010423_040--Hb_005615_080 Hb_000103_090 Hb_000103_090 Hb_010423_040--Hb_000103_090 Hb_000103_080 Hb_000103_080 Hb_010423_040--Hb_000103_080 Hb_012799_130--Hb_010691_060 Hb_002272_180 Hb_002272_180 Hb_012799_130--Hb_002272_180 Hb_185830_020 Hb_185830_020 Hb_012799_130--Hb_185830_020 Hb_012799_130--Hb_012490_030 Hb_012799_130--Hb_006157_020 Hb_004881_020 Hb_004881_020 Hb_012799_130--Hb_004881_020 Hb_012490_030--Hb_002272_180 Hb_000429_120 Hb_000429_120 Hb_012490_030--Hb_000429_120 Hb_020719_030 Hb_020719_030 Hb_012490_030--Hb_020719_030 Hb_001866_110 Hb_001866_110 Hb_012490_030--Hb_001866_110 Hb_000889_020 Hb_000889_020 Hb_012490_030--Hb_000889_020 Hb_002784_060 Hb_002784_060 Hb_012490_030--Hb_002784_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.48271 0.90493 0.483535 1.25841 1.65077 3.85274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.30729 2.53566 0.48941 2.56045 1.02075

CAGE analysis