Hb_023827_010

Information

Type -
Description -
Location Contig23827: 5658-6448
Sequence    

Annotation

kegg
ID rcu:RCOM_1075160
description Cucumber peeling cupredoxin, putative
nr
ID XP_002527195.1
description Cucumber peeling cupredoxin, putative [Ricinus communis]
swissprot
ID P42849
description Umecyanin OS=Armoracia rusticana PE=1 SV=1
trembl
ID B9SMH6
description Cucumber peeling cupredoxin, putative OS=Ricinus communis GN=RCOM_1075160 PE=4 SV=1
Gene Ontology
ID GO:0050896
description blue copper

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023827_010 0.0 - - Cucumber peeling cupredoxin, putative [Ricinus communis]
2 Hb_030593_010 0.0237388501 - - hypothetical protein JCGZ_06063 [Jatropha curcas]
3 Hb_001766_090 0.0451822578 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
4 Hb_009740_010 0.048274011 - - receptor-kinase, putative [Ricinus communis]
5 Hb_007658_030 0.0584282637 - - PREDICTED: lupeol synthase-like isoform X1 [Populus euphratica]
6 Hb_000484_050 0.0584646786 - - hypothetical protein CICLE_v10028549mg [Citrus clementina]
7 Hb_011909_130 0.0623222837 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Populus euphratica]
8 Hb_064855_010 0.0709352374 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_034558_010 0.0719346718 - - -
10 Hb_000871_020 0.0786961378 - - receptor-kinase, putative [Ricinus communis]
11 Hb_128894_010 0.0820946687 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_011639_130 0.0825438892 - - mads box protein, putative [Ricinus communis]
13 Hb_004829_050 0.0835300645 - - hypothetical protein TRIUR3_09654 [Triticum urartu]
14 Hb_001403_100 0.0892172314 - - hypothetical protein CICLE_v10017457mg, partial [Citrus clementina]
15 Hb_001104_260 0.0895544697 - - hypothetical protein JCGZ_23628 [Jatropha curcas]
16 Hb_011924_030 0.0900801145 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000796_100 0.0926966534 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
18 Hb_106595_010 0.0933293102 - - hypothetical protein B456_003G065300 [Gossypium raimondii]
19 Hb_005204_030 0.0973413416 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
20 Hb_030312_060 0.1001465094 - - PREDICTED: uncharacterized protein LOC105634226 [Jatropha curcas]

Gene co-expression network

sample Hb_023827_010 Hb_023827_010 Hb_030593_010 Hb_030593_010 Hb_023827_010--Hb_030593_010 Hb_001766_090 Hb_001766_090 Hb_023827_010--Hb_001766_090 Hb_009740_010 Hb_009740_010 Hb_023827_010--Hb_009740_010 Hb_007658_030 Hb_007658_030 Hb_023827_010--Hb_007658_030 Hb_000484_050 Hb_000484_050 Hb_023827_010--Hb_000484_050 Hb_011909_130 Hb_011909_130 Hb_023827_010--Hb_011909_130 Hb_030593_010--Hb_001766_090 Hb_030593_010--Hb_007658_030 Hb_030593_010--Hb_000484_050 Hb_030593_010--Hb_011909_130 Hb_030593_010--Hb_009740_010 Hb_034558_010 Hb_034558_010 Hb_001766_090--Hb_034558_010 Hb_001766_090--Hb_007658_030 Hb_128894_010 Hb_128894_010 Hb_001766_090--Hb_128894_010 Hb_001766_090--Hb_000484_050 Hb_000871_020 Hb_000871_020 Hb_009740_010--Hb_000871_020 Hb_009740_010--Hb_001766_090 Hb_009740_010--Hb_007658_030 Hb_009740_010--Hb_000484_050 Hb_007658_030--Hb_000484_050 Hb_007658_030--Hb_011909_130 Hb_007658_030--Hb_034558_010 Hb_007658_030--Hb_128894_010 Hb_000484_050--Hb_011909_130 Hb_000484_050--Hb_034558_010 Hb_011639_130 Hb_011639_130 Hb_000484_050--Hb_011639_130 Hb_011909_130--Hb_011639_130 Hb_004829_050 Hb_004829_050 Hb_011909_130--Hb_004829_050 Hb_001403_100 Hb_001403_100 Hb_011909_130--Hb_001403_100 Hb_001104_260 Hb_001104_260 Hb_011909_130--Hb_001104_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 12.6673 0 0.0938605 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.06573 0

CAGE analysis