Hb_023827_030

Information

Type -
Description -
Location Contig23827: 17884-19862
Sequence    

Annotation

kegg
ID rcu:RCOM_1075480
description Thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative
nr
ID XP_011017782.1
description PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic-like [Populus euphratica]
swissprot
ID O22773
description Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At4g02530 PE=1 SV=3
trembl
ID B9SMH8
description Thylakoid lumenal 16.5 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1075480 PE=4 SV=1
Gene Ontology
ID GO:0009535
description thylakoid lumenal kda chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24989: 17824-19838
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023827_030 0.0 - - PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic-like [Populus euphratica]
2 Hb_000069_440 0.0610177377 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
3 Hb_016297_010 0.0646123208 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
4 Hb_000282_020 0.068628031 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
5 Hb_019053_040 0.0713365237 - - cytochrome P450, putative [Ricinus communis]
6 Hb_023582_010 0.0752053487 - - conserved hypothetical protein [Ricinus communis]
7 Hb_105148_020 0.0753184966 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
8 Hb_129956_010 0.0754088442 - - PREDICTED: serine/threonine-protein kinase SAPK2 [Eucalyptus grandis]
9 Hb_000005_060 0.0766657777 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
10 Hb_001166_010 0.0769529924 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
11 Hb_004411_010 0.0806663378 - - PREDICTED: NADP-dependent alkenal double bond reductase P2-like isoform X5 [Gossypium raimondii]
12 Hb_000312_100 0.0827249541 - - PREDICTED: septum-promoting GTP-binding protein 1-like [Jatropha curcas]
13 Hb_007853_030 0.0837490422 - - structural molecule, putative [Ricinus communis]
14 Hb_007681_010 0.0853336799 - - hypothetical protein RCOM_2128750 [Ricinus communis]
15 Hb_001266_010 0.0880710262 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]
16 Hb_002044_100 0.0919617374 - - PREDICTED: uncharacterized protein LOC105643555 [Jatropha curcas]
17 Hb_005276_140 0.0948994798 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006620_030 0.096421236 - - nitrate reductase, putative [Ricinus communis]
19 Hb_000722_030 0.0970270978 - - putative plant disease resistance family protein [Populus trichocarpa]
20 Hb_000510_250 0.0977535377 transcription factor TF Family: AUX/IAA auxin-induced protein aux28 [Populus trichocarpa]

Gene co-expression network

sample Hb_023827_030 Hb_023827_030 Hb_000069_440 Hb_000069_440 Hb_023827_030--Hb_000069_440 Hb_016297_010 Hb_016297_010 Hb_023827_030--Hb_016297_010 Hb_000282_020 Hb_000282_020 Hb_023827_030--Hb_000282_020 Hb_019053_040 Hb_019053_040 Hb_023827_030--Hb_019053_040 Hb_023582_010 Hb_023582_010 Hb_023827_030--Hb_023582_010 Hb_105148_020 Hb_105148_020 Hb_023827_030--Hb_105148_020 Hb_004411_010 Hb_004411_010 Hb_000069_440--Hb_004411_010 Hb_000069_440--Hb_000282_020 Hb_007853_030 Hb_007853_030 Hb_000069_440--Hb_007853_030 Hb_000069_220 Hb_000069_220 Hb_000069_440--Hb_000069_220 Hb_001266_010 Hb_001266_010 Hb_000069_440--Hb_001266_010 Hb_016297_010--Hb_023582_010 Hb_000722_030 Hb_000722_030 Hb_016297_010--Hb_000722_030 Hb_016297_010--Hb_019053_040 Hb_001258_130 Hb_001258_130 Hb_016297_010--Hb_001258_130 Hb_016297_010--Hb_105148_020 Hb_000282_020--Hb_019053_040 Hb_000282_020--Hb_004411_010 Hb_000005_060 Hb_000005_060 Hb_000282_020--Hb_000005_060 Hb_000282_020--Hb_023582_010 Hb_019053_040--Hb_023582_010 Hb_001166_010 Hb_001166_010 Hb_019053_040--Hb_001166_010 Hb_019053_040--Hb_105148_020 Hb_002066_100 Hb_002066_100 Hb_019053_040--Hb_002066_100 Hb_023582_010--Hb_000722_030 Hb_023582_010--Hb_000005_060 Hb_023582_010--Hb_105148_020 Hb_006620_030 Hb_006620_030 Hb_105148_020--Hb_006620_030 Hb_105148_020--Hb_001166_010 Hb_105148_020--Hb_001258_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.58721 97.7371 39.1576 0.629926 0.148342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0513152 0 0 0.405854 52.7203

CAGE analysis