Hb_023827_040

Information

Type -
Description -
Location Contig23827: 21491-25647
Sequence    

Annotation

kegg
ID tcc:TCM_038107
description Methyl-CPG-binding domain 10, putative isoform 1
nr
ID XP_012078815.1
description PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
swissprot
ID Q9LW00
description Methyl-CpG-binding domain-containing protein 11 OS=Arabidopsis thaliana GN=MBD11 PE=1 SV=1
trembl
ID A0A067KJI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13350 PE=4 SV=1
Gene Ontology
ID GO:0005634
description methyl- -binding domain-containing protein 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24993: 24965-25401 , PASA_asmbl_24994: 21535-25605 , PASA_asmbl_24996: 24405-24666
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023827_040 0.0 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
2 Hb_076693_020 0.0716542079 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
3 Hb_045793_010 0.0718443494 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
4 Hb_000865_080 0.0746047434 - - arsenite-resistance protein, putative [Ricinus communis]
5 Hb_000025_360 0.0759545905 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
6 Hb_000224_060 0.0767369802 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
7 Hb_001610_110 0.0848794074 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
8 Hb_000291_190 0.0871568783 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
9 Hb_015026_070 0.0894440893 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
10 Hb_003878_140 0.090150544 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
11 Hb_001623_140 0.0904175197 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
12 Hb_012807_050 0.0960908087 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
13 Hb_000421_120 0.0963158962 - - PREDICTED: NEDD8-specific protease 1 [Jatropha curcas]
14 Hb_001584_170 0.0974369004 - - neutral/alkaline invertase [Manihot esculenta]
15 Hb_004970_150 0.0975021802 - - PREDICTED: uncharacterized protein LOC105633636 [Jatropha curcas]
16 Hb_006847_040 0.0975178014 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 1 [Jatropha curcas]
17 Hb_005675_040 0.0980014192 transcription factor TF Family: ERF unnamed protein product [Vitis vinifera]
18 Hb_042038_020 0.1015243908 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
19 Hb_001059_100 0.1030413691 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
20 Hb_000140_070 0.1037764675 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_023827_040 Hb_023827_040 Hb_076693_020 Hb_076693_020 Hb_023827_040--Hb_076693_020 Hb_045793_010 Hb_045793_010 Hb_023827_040--Hb_045793_010 Hb_000865_080 Hb_000865_080 Hb_023827_040--Hb_000865_080 Hb_000025_360 Hb_000025_360 Hb_023827_040--Hb_000025_360 Hb_000224_060 Hb_000224_060 Hb_023827_040--Hb_000224_060 Hb_001610_110 Hb_001610_110 Hb_023827_040--Hb_001610_110 Hb_000322_150 Hb_000322_150 Hb_076693_020--Hb_000322_150 Hb_076693_020--Hb_045793_010 Hb_000441_070 Hb_000441_070 Hb_076693_020--Hb_000441_070 Hb_076693_020--Hb_000025_360 Hb_006847_040 Hb_006847_040 Hb_076693_020--Hb_006847_040 Hb_045793_010--Hb_000025_360 Hb_000827_070 Hb_000827_070 Hb_045793_010--Hb_000827_070 Hb_045793_010--Hb_006847_040 Hb_001021_170 Hb_001021_170 Hb_045793_010--Hb_001021_170 Hb_000174_220 Hb_000174_220 Hb_045793_010--Hb_000174_220 Hb_000291_190 Hb_000291_190 Hb_000865_080--Hb_000291_190 Hb_000865_080--Hb_000224_060 Hb_000363_130 Hb_000363_130 Hb_000865_080--Hb_000363_130 Hb_004970_150 Hb_004970_150 Hb_000865_080--Hb_004970_150 Hb_000865_080--Hb_000025_360 Hb_002188_110 Hb_002188_110 Hb_000025_360--Hb_002188_110 Hb_000046_010 Hb_000046_010 Hb_000025_360--Hb_000046_010 Hb_001718_090 Hb_001718_090 Hb_000025_360--Hb_001718_090 Hb_183963_030 Hb_183963_030 Hb_000025_360--Hb_183963_030 Hb_000107_500 Hb_000107_500 Hb_000025_360--Hb_000107_500 Hb_003878_140 Hb_003878_140 Hb_000224_060--Hb_003878_140 Hb_000224_060--Hb_000291_190 Hb_000140_080 Hb_000140_080 Hb_000224_060--Hb_000140_080 Hb_000224_060--Hb_000025_360 Hb_001616_050 Hb_001616_050 Hb_000224_060--Hb_001616_050 Hb_001623_140 Hb_001623_140 Hb_001610_110--Hb_001623_140 Hb_052764_050 Hb_052764_050 Hb_001610_110--Hb_052764_050 Hb_004324_340 Hb_004324_340 Hb_001610_110--Hb_004324_340 Hb_001288_080 Hb_001288_080 Hb_001610_110--Hb_001288_080 Hb_000621_080 Hb_000621_080 Hb_001610_110--Hb_000621_080 Hb_086639_070 Hb_086639_070 Hb_001610_110--Hb_086639_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
123.894 155.6 42.3127 27.5284 94.3466 146.891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
71.6835 89.7079 77.3659 47.9004 33.2746

CAGE analysis