Hb_023956_010

Information

Type -
Description -
Location Contig23956: 2-578
Sequence    

Annotation

kegg
ID rcu:RCOM_0699100
description glutathione s-transferase, putative (EC:4.4.1.5)
nr
ID XP_002520166.1
description glutathione s-transferase, putative [Ricinus communis]
swissprot
ID Q9FUS8
description Glutathione S-transferase U17 OS=Arabidopsis thaliana GN=GSTU17 PE=2 SV=1
trembl
ID B9S2E7
description Glutathione s-transferase, putative OS=Ricinus communis GN=RCOM_0699100 PE=3 SV=1
Gene Ontology
ID GO:0004462
description glutathione s-transferase u17-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023956_010 0.0 - - glutathione s-transferase, putative [Ricinus communis]
2 Hb_003847_050 0.056407845 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
3 Hb_002553_070 0.0740011784 - - PREDICTED: RING-H2 finger protein ATL16 [Jatropha curcas]
4 Hb_006846_030 0.0750961951 - - respiratory burst oxidase A [Manihot esculenta]
5 Hb_012787_050 0.0789094052 - - PREDICTED: glutathione S-transferase U18-like [Jatropha curcas]
6 Hb_002236_010 0.0870204267 - - PREDICTED: bidirectional sugar transporter SWEET4 [Jatropha curcas]
7 Hb_019026_050 0.0938697662 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000070_070 0.0953775648 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
9 Hb_001568_010 0.0964883708 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005679_120 0.1020334315 - - hypothetical protein RCOM_0284080 [Ricinus communis]
11 Hb_007625_030 0.1080123434 - - unknown [Medicago truncatula]
12 Hb_011129_020 0.1110744687 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
13 Hb_000479_230 0.1120251451 - - hypothetical protein JCGZ_19903 [Jatropha curcas]
14 Hb_000014_080 0.1122005451 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
15 Hb_003964_060 0.1144955453 - - PREDICTED: beta-glucosidase 40 [Jatropha curcas]
16 Hb_008727_040 0.1148323403 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005489_120 0.1229472185 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
18 Hb_004282_010 0.1232005949 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
19 Hb_004079_100 0.1300783931 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
20 Hb_000594_160 0.1301508777 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]

Gene co-expression network

sample Hb_023956_010 Hb_023956_010 Hb_003847_050 Hb_003847_050 Hb_023956_010--Hb_003847_050 Hb_002553_070 Hb_002553_070 Hb_023956_010--Hb_002553_070 Hb_006846_030 Hb_006846_030 Hb_023956_010--Hb_006846_030 Hb_012787_050 Hb_012787_050 Hb_023956_010--Hb_012787_050 Hb_002236_010 Hb_002236_010 Hb_023956_010--Hb_002236_010 Hb_019026_050 Hb_019026_050 Hb_023956_010--Hb_019026_050 Hb_003847_050--Hb_006846_030 Hb_001568_010 Hb_001568_010 Hb_003847_050--Hb_001568_010 Hb_003847_050--Hb_012787_050 Hb_003847_050--Hb_019026_050 Hb_002448_020 Hb_002448_020 Hb_003847_050--Hb_002448_020 Hb_002553_070--Hb_002236_010 Hb_000571_060 Hb_000571_060 Hb_002553_070--Hb_000571_060 Hb_002553_070--Hb_019026_050 Hb_005679_120 Hb_005679_120 Hb_002553_070--Hb_005679_120 Hb_002553_070--Hb_006846_030 Hb_006846_030--Hb_012787_050 Hb_006846_030--Hb_001568_010 Hb_006846_030--Hb_002448_020 Hb_006846_030--Hb_019026_050 Hb_000070_070 Hb_000070_070 Hb_012787_050--Hb_000070_070 Hb_002333_010 Hb_002333_010 Hb_012787_050--Hb_002333_010 Hb_008727_040 Hb_008727_040 Hb_012787_050--Hb_008727_040 Hb_002236_010--Hb_000070_070 Hb_002236_010--Hb_005679_120 Hb_002236_010--Hb_000571_060 Hb_007625_030 Hb_007625_030 Hb_002236_010--Hb_007625_030 Hb_000120_320 Hb_000120_320 Hb_019026_050--Hb_000120_320 Hb_007632_130 Hb_007632_130 Hb_019026_050--Hb_007632_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.144363 266.508 254.487 708.207 0.356656 0.129671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.1866 0 0.584523 585.914 185.779

CAGE analysis