Hb_023988_020

Information

Type -
Description -
Location Contig23988: 13626-18107
Sequence    

Annotation

kegg
ID pmum:103340992
description transmembrane protein 19
nr
ID XP_008242690.1
description PREDICTED: transmembrane protein 19 [Prunus mume]
swissprot
ID -
description -
trembl
ID M5VRT1
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010966mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25103: 13697-18043
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023988_020 0.0 - - PREDICTED: transmembrane protein 19 [Prunus mume]
2 Hb_000920_140 0.0749140754 - - annexin [Manihot esculenta]
3 Hb_001696_030 0.0811083075 - - cytochrome P450, putative [Ricinus communis]
4 Hb_004032_440 0.1018925394 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
5 Hb_000184_040 0.1082905884 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
6 Hb_000376_110 0.1097279087 - - PREDICTED: O-acyltransferase WSD1-like [Brachypodium distachyon]
7 Hb_005271_170 0.1192277579 - - PREDICTED: tetraspanin-10 isoform X3 [Vitis vinifera]
8 Hb_000028_050 0.1193965132 - - aldose-1-epimerase, putative [Ricinus communis]
9 Hb_001205_090 0.1236259342 - - PREDICTED: random slug protein 5 [Jatropha curcas]
10 Hb_005167_040 0.1252182495 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
11 Hb_001017_090 0.1272374276 - - -
12 Hb_001047_010 0.1287980909 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004659_120 0.1297408305 rubber biosynthesis Gene Name: CPTL PREDICTED: dehydrodolichyl diphosphate syntase complex subunit NUS1 isoform X3 [Jatropha curcas]
14 Hb_000762_020 0.1327560255 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
15 Hb_000085_340 0.1388519213 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
16 Hb_017434_090 0.1393059784 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007766_010 0.1439168109 - - hypothetical protein JCGZ_06718 [Jatropha curcas]
18 Hb_000258_430 0.1477775132 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
19 Hb_000481_020 0.1486005538 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
20 Hb_001002_040 0.149714868 - - PREDICTED: ATP-citrate synthase beta chain protein 2 [Gossypium raimondii]

Gene co-expression network

sample Hb_023988_020 Hb_023988_020 Hb_000920_140 Hb_000920_140 Hb_023988_020--Hb_000920_140 Hb_001696_030 Hb_001696_030 Hb_023988_020--Hb_001696_030 Hb_004032_440 Hb_004032_440 Hb_023988_020--Hb_004032_440 Hb_000184_040 Hb_000184_040 Hb_023988_020--Hb_000184_040 Hb_000376_110 Hb_000376_110 Hb_023988_020--Hb_000376_110 Hb_005271_170 Hb_005271_170 Hb_023988_020--Hb_005271_170 Hb_000920_140--Hb_000376_110 Hb_000920_140--Hb_004032_440 Hb_000920_140--Hb_001696_030 Hb_000762_020 Hb_000762_020 Hb_000920_140--Hb_000762_020 Hb_019516_040 Hb_019516_040 Hb_000920_140--Hb_019516_040 Hb_005167_040 Hb_005167_040 Hb_001696_030--Hb_005167_040 Hb_007766_010 Hb_007766_010 Hb_001696_030--Hb_007766_010 Hb_001205_090 Hb_001205_090 Hb_001696_030--Hb_001205_090 Hb_004659_120 Hb_004659_120 Hb_001696_030--Hb_004659_120 Hb_001696_030--Hb_000376_110 Hb_017434_090 Hb_017434_090 Hb_004032_440--Hb_017434_090 Hb_004032_440--Hb_000184_040 Hb_004032_440--Hb_000376_110 Hb_004032_440--Hb_000762_020 Hb_001047_010 Hb_001047_010 Hb_000184_040--Hb_001047_010 Hb_000184_040--Hb_000762_020 Hb_000184_040--Hb_004659_120 Hb_000481_020 Hb_000481_020 Hb_000184_040--Hb_000481_020 Hb_002235_400 Hb_002235_400 Hb_000184_040--Hb_002235_400 Hb_000641_030 Hb_000641_030 Hb_000376_110--Hb_000641_030 Hb_007810_040 Hb_007810_040 Hb_000376_110--Hb_007810_040 Hb_005271_170--Hb_001047_010 Hb_005271_170--Hb_000184_040 Hb_003453_010 Hb_003453_010 Hb_005271_170--Hb_003453_010 Hb_002400_220 Hb_002400_220 Hb_005271_170--Hb_002400_220 Hb_001269_150 Hb_001269_150 Hb_005271_170--Hb_001269_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
120.114 6.86629 3.19966 37.7646 71.0638 99.7215
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
116.069 36.1489 44.9137 8.07042 4.01555

CAGE analysis