Hb_024066_050

Information

Type -
Description -
Location Contig24066: 52778-61057
Sequence    

Annotation

kegg
ID rcu:RCOM_1528960
description lipoxygenase, putative (EC:1.13.11.12)
nr
ID XP_002513228.1
description lipoxygenase, putative [Ricinus communis]
swissprot
ID O24370
description Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum GN=LOX2.1 PE=1 SV=1
trembl
ID B9RHK9
description Lipoxygenase OS=Ricinus communis GN=RCOM_1528960 PE=3 SV=1
Gene Ontology
ID GO:0044434
description linoleate 13s-lipoxygenase 2- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25219: 53249-53459
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024066_050 0.0 - - lipoxygenase, putative [Ricinus communis]
2 Hb_000212_370 0.2779037049 - - thioredoxin f-type, putative [Ricinus communis]
3 Hb_006062_030 0.2895337626 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
4 Hb_000053_120 0.2914218927 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
5 Hb_005332_150 0.2936038373 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Jatropha curcas]
6 Hb_001862_090 0.2954152605 - - hypothetical protein VITISV_026680 [Vitis vinifera]
7 Hb_005466_010 0.2968267822 - - ATPase subunit 6, partial (mitochondrion) [Celastrus scandens]
8 Hb_023771_020 0.2995456264 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X3 [Jatropha curcas]
9 Hb_002894_090 0.300638053 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Jatropha curcas]
10 Hb_000069_370 0.3010692826 - - -
11 Hb_006856_030 0.3055439536 - - Uridine kinase-like protein 4 [Glycine soja]
12 Hb_007317_130 0.3059695837 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
13 Hb_000122_260 0.3066252388 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 1-like [Jatropha curcas]
14 Hb_001343_020 0.3080612317 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_017075_020 0.310783622 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
16 Hb_000661_090 0.3112039555 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
17 Hb_000120_900 0.3117043627 - - catalase [Hevea brasiliensis]
18 Hb_002671_130 0.3124239322 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
19 Hb_002010_110 0.3126097649 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
20 Hb_003494_130 0.3139672188 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 9-like [Jatropha curcas]

Gene co-expression network

sample Hb_024066_050 Hb_024066_050 Hb_000212_370 Hb_000212_370 Hb_024066_050--Hb_000212_370 Hb_006062_030 Hb_006062_030 Hb_024066_050--Hb_006062_030 Hb_000053_120 Hb_000053_120 Hb_024066_050--Hb_000053_120 Hb_005332_150 Hb_005332_150 Hb_024066_050--Hb_005332_150 Hb_001862_090 Hb_001862_090 Hb_024066_050--Hb_001862_090 Hb_005466_010 Hb_005466_010 Hb_024066_050--Hb_005466_010 Hb_021079_020 Hb_021079_020 Hb_000212_370--Hb_021079_020 Hb_004162_190 Hb_004162_190 Hb_000212_370--Hb_004162_190 Hb_005288_180 Hb_005288_180 Hb_000212_370--Hb_005288_180 Hb_007576_150 Hb_007576_150 Hb_000212_370--Hb_007576_150 Hb_002799_130 Hb_002799_130 Hb_000212_370--Hb_002799_130 Hb_003494_130 Hb_003494_130 Hb_000212_370--Hb_003494_130 Hb_000537_070 Hb_000537_070 Hb_006062_030--Hb_000537_070 Hb_000661_090 Hb_000661_090 Hb_006062_030--Hb_000661_090 Hb_006062_030--Hb_000053_120 Hb_001723_030 Hb_001723_030 Hb_006062_030--Hb_001723_030 Hb_005618_150 Hb_005618_150 Hb_006062_030--Hb_005618_150 Hb_003777_020 Hb_003777_020 Hb_006062_030--Hb_003777_020 Hb_003427_080 Hb_003427_080 Hb_000053_120--Hb_003427_080 Hb_024714_080 Hb_024714_080 Hb_000053_120--Hb_024714_080 Hb_003077_130 Hb_003077_130 Hb_000053_120--Hb_003077_130 Hb_000069_490 Hb_000069_490 Hb_000053_120--Hb_000069_490 Hb_000402_170 Hb_000402_170 Hb_000053_120--Hb_000402_170 Hb_000038_020 Hb_000038_020 Hb_005332_150--Hb_000038_020 Hb_004109_130 Hb_004109_130 Hb_005332_150--Hb_004109_130 Hb_000966_040 Hb_000966_040 Hb_005332_150--Hb_000966_040 Hb_168031_020 Hb_168031_020 Hb_005332_150--Hb_168031_020 Hb_000069_370 Hb_000069_370 Hb_005332_150--Hb_000069_370 Hb_166127_030 Hb_166127_030 Hb_005332_150--Hb_166127_030 Hb_001862_090--Hb_002799_130 Hb_001862_090--Hb_000212_370 Hb_009150_030 Hb_009150_030 Hb_001862_090--Hb_009150_030 Hb_001054_070 Hb_001054_070 Hb_001862_090--Hb_001054_070 Hb_002078_270 Hb_002078_270 Hb_001862_090--Hb_002078_270 Hb_007317_130 Hb_007317_130 Hb_001862_090--Hb_007317_130 Hb_141990_020 Hb_141990_020 Hb_005466_010--Hb_141990_020 Hb_117001_010 Hb_117001_010 Hb_005466_010--Hb_117001_010 Hb_003327_020 Hb_003327_020 Hb_005466_010--Hb_003327_020 Hb_000856_320 Hb_000856_320 Hb_005466_010--Hb_000856_320 Hb_000518_040 Hb_000518_040 Hb_005466_010--Hb_000518_040 Hb_062273_010 Hb_062273_010 Hb_005466_010--Hb_062273_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0164493 0.0737723 0.0763363 0.0257829 0.0462279 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0750773 0 0.0551099 0 0.306638

CAGE analysis