Hb_024071_030

Information

Type -
Description -
Location Contig24071: 13525-19107
Sequence    

Annotation

kegg
ID cic:CICLE_v10025479mg
description hypothetical protein
nr
ID XP_006425595.1
description hypothetical protein CICLE_v10025479mg [Citrus clementina]
swissprot
ID Q9M066
description 3-epi-6-deoxocathasterone 23-monooxygenase OS=Arabidopsis thaliana GN=ROT3 PE=2 SV=3
trembl
ID V4SJ22
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10025479mg PE=3 SV=1
Gene Ontology
ID GO:0005506
description 3-epi-6-deoxocathasterone 23-monooxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25228: 13951-18964
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024071_030 0.0 - - hypothetical protein CICLE_v10025479mg [Citrus clementina]
2 Hb_009663_020 0.0353126277 - - -
3 Hb_007120_120 0.0476727612 - - protein binding protein, putative [Ricinus communis]
4 Hb_000556_060 0.0558740287 - - hypothetical protein OsJ_28181 [Oryza sativa Japonica Group]
5 Hb_163566_010 0.0630808178 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Amborella trichopoda]
6 Hb_000321_110 0.0640207088 - - Uncharacterized protein TCM_041937 [Theobroma cacao]
7 Hb_009847_010 0.0653534054 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
8 Hb_001652_100 0.0710512143 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
9 Hb_031022_030 0.0716764339 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7-like [Jatropha curcas]
10 Hb_016734_100 0.0809758894 - - -
11 Hb_000847_090 0.0848690306 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
12 Hb_132840_190 0.0854315515 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
13 Hb_007221_020 0.0865522597 - - FAD-binding domain-containing family protein [Populus trichocarpa]
14 Hb_007922_030 0.0909905134 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
15 Hb_001642_020 0.0967005709 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
16 Hb_006711_030 0.0979335643 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
17 Hb_008021_060 0.0990794288 - - Squalene monooxygenase, putative [Ricinus communis]
18 Hb_001426_020 0.0991319252 - - hypothetical protein CICLE_v10033594mg, partial [Citrus clementina]
19 Hb_000487_080 0.099275962 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
20 Hb_005833_010 0.0996645528 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_024071_030 Hb_024071_030 Hb_009663_020 Hb_009663_020 Hb_024071_030--Hb_009663_020 Hb_007120_120 Hb_007120_120 Hb_024071_030--Hb_007120_120 Hb_000556_060 Hb_000556_060 Hb_024071_030--Hb_000556_060 Hb_163566_010 Hb_163566_010 Hb_024071_030--Hb_163566_010 Hb_000321_110 Hb_000321_110 Hb_024071_030--Hb_000321_110 Hb_009847_010 Hb_009847_010 Hb_024071_030--Hb_009847_010 Hb_009663_020--Hb_007120_120 Hb_009663_020--Hb_163566_010 Hb_016734_100 Hb_016734_100 Hb_009663_020--Hb_016734_100 Hb_001652_100 Hb_001652_100 Hb_009663_020--Hb_001652_100 Hb_009663_020--Hb_000321_110 Hb_007120_120--Hb_016734_100 Hb_007120_120--Hb_001652_100 Hb_007120_120--Hb_163566_010 Hb_001642_020 Hb_001642_020 Hb_007120_120--Hb_001642_020 Hb_000556_060--Hb_009847_010 Hb_000847_090 Hb_000847_090 Hb_000556_060--Hb_000847_090 Hb_007044_240 Hb_007044_240 Hb_000556_060--Hb_007044_240 Hb_000556_060--Hb_009663_020 Hb_000556_060--Hb_007120_120 Hb_005833_010 Hb_005833_010 Hb_163566_010--Hb_005833_010 Hb_163566_010--Hb_016734_100 Hb_001426_020 Hb_001426_020 Hb_163566_010--Hb_001426_020 Hb_000487_080 Hb_000487_080 Hb_163566_010--Hb_000487_080 Hb_000321_110--Hb_001652_100 Hb_000321_110--Hb_163566_010 Hb_000321_110--Hb_007120_120 Hb_007922_030 Hb_007922_030 Hb_000321_110--Hb_007922_030 Hb_009847_010--Hb_000847_090 Hb_009847_010--Hb_007044_240 Hb_000127_240 Hb_000127_240 Hb_009847_010--Hb_000127_240 Hb_000375_220 Hb_000375_220 Hb_009847_010--Hb_000375_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 12.3902 11.2695 0 0.00947242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0193566 0 0.00770687 7.30498

CAGE analysis