Hb_024074_040

Information

Type -
Description -
Location Contig24074: 25197-30437
Sequence    

Annotation

kegg
ID rcu:RCOM_0757640
description leucyl-tRNA synthetase, putative (EC:6.1.1.4)
nr
ID XP_012066702.1
description PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
swissprot
ID Q8BMJ2
description Leucine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Lars PE=1 SV=2
trembl
ID A0A067LEE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00261 PE=3 SV=1
Gene Ontology
ID GO:0005737
description leucine--trna cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25236: 28436-28932
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024074_040 0.0 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
2 Hb_002400_460 0.0817443971 - - PREDICTED: uncharacterized protein LOC105637599 isoform X2 [Jatropha curcas]
3 Hb_000757_100 0.0949986128 - - SPla/RYanodine receptor domain-containing protein isoform 2 [Theobroma cacao]
4 Hb_006637_020 0.1018975696 - - PREDICTED: uncharacterized protein LOC105642234 [Jatropha curcas]
5 Hb_026228_020 0.1330764818 - - PREDICTED: uncharacterized protein LOC105632747 [Jatropha curcas]
6 Hb_004410_050 0.1356634072 - - PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Jatropha curcas]
7 Hb_000260_600 0.1384349154 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004725_050 0.1415785062 - - Rhomboid protein, putative [Ricinus communis]
9 Hb_000061_240 0.1424649435 - - kinase, putative [Ricinus communis]
10 Hb_017966_020 0.1441452034 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Jatropha curcas]
11 Hb_001472_090 0.1443795098 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X1 [Jatropha curcas]
12 Hb_000723_220 0.144620302 - - PREDICTED: uncharacterized protein LOC105642234 [Jatropha curcas]
13 Hb_000031_170 0.144656653 - - PREDICTED: abnormal long morphology protein 1 isoform X1 [Jatropha curcas]
14 Hb_002027_290 0.1469751508 - - PREDICTED: NPL4-like protein 1 [Jatropha curcas]
15 Hb_000048_060 0.1470952048 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
16 Hb_001377_270 0.1471054903 - - hypothetical protein CICLE_v10021159mg [Citrus clementina]
17 Hb_004228_010 0.147423191 - - PREDICTED: BEACH domain-containing protein lvsA [Jatropha curcas]
18 Hb_005269_040 0.1485437406 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g06270 [Jatropha curcas]
19 Hb_001018_130 0.1492326344 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
20 Hb_005706_040 0.150252235 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]

Gene co-expression network

sample Hb_024074_040 Hb_024074_040 Hb_002400_460 Hb_002400_460 Hb_024074_040--Hb_002400_460 Hb_000757_100 Hb_000757_100 Hb_024074_040--Hb_000757_100 Hb_006637_020 Hb_006637_020 Hb_024074_040--Hb_006637_020 Hb_026228_020 Hb_026228_020 Hb_024074_040--Hb_026228_020 Hb_004410_050 Hb_004410_050 Hb_024074_040--Hb_004410_050 Hb_000260_600 Hb_000260_600 Hb_024074_040--Hb_000260_600 Hb_000061_240 Hb_000061_240 Hb_002400_460--Hb_000061_240 Hb_000174_270 Hb_000174_270 Hb_002400_460--Hb_000174_270 Hb_000291_150 Hb_000291_150 Hb_002400_460--Hb_000291_150 Hb_004725_050 Hb_004725_050 Hb_002400_460--Hb_004725_050 Hb_000037_190 Hb_000037_190 Hb_002400_460--Hb_000037_190 Hb_000757_100--Hb_006637_020 Hb_010697_040 Hb_010697_040 Hb_000757_100--Hb_010697_040 Hb_000757_100--Hb_002400_460 Hb_002454_020 Hb_002454_020 Hb_000757_100--Hb_002454_020 Hb_003430_060 Hb_003430_060 Hb_000757_100--Hb_003430_060 Hb_000723_220 Hb_000723_220 Hb_006637_020--Hb_000723_220 Hb_002311_100 Hb_002311_100 Hb_006637_020--Hb_002311_100 Hb_000696_050 Hb_000696_050 Hb_006637_020--Hb_000696_050 Hb_001195_470 Hb_001195_470 Hb_006637_020--Hb_001195_470 Hb_006637_020--Hb_004410_050 Hb_005023_030 Hb_005023_030 Hb_026228_020--Hb_005023_030 Hb_072922_010 Hb_072922_010 Hb_026228_020--Hb_072922_010 Hb_001018_130 Hb_001018_130 Hb_026228_020--Hb_001018_130 Hb_001018_110 Hb_001018_110 Hb_026228_020--Hb_001018_110 Hb_001318_200 Hb_001318_200 Hb_026228_020--Hb_001318_200 Hb_001135_140 Hb_001135_140 Hb_026228_020--Hb_001135_140 Hb_004410_050--Hb_000723_220 Hb_000556_220 Hb_000556_220 Hb_004410_050--Hb_000556_220 Hb_004410_050--Hb_001195_470 Hb_004410_050--Hb_000696_050 Hb_140627_020 Hb_140627_020 Hb_004410_050--Hb_140627_020 Hb_000680_110 Hb_000680_110 Hb_004410_050--Hb_000680_110 Hb_000991_040 Hb_000991_040 Hb_000260_600--Hb_000991_040 Hb_000140_350 Hb_000140_350 Hb_000260_600--Hb_000140_350 Hb_000890_230 Hb_000890_230 Hb_000260_600--Hb_000890_230 Hb_000322_070 Hb_000322_070 Hb_000260_600--Hb_000322_070 Hb_000009_400 Hb_000009_400 Hb_000260_600--Hb_000009_400 Hb_003617_020 Hb_003617_020 Hb_000260_600--Hb_003617_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.04275 7.3982 1.04576 8.45375 4.88786 8.0049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.49671 3.26455 4.9047 2.22051 6.09616

CAGE analysis