Hb_024105_010

Information

Type -
Description -
Location Contig24105: 38-3823
Sequence    

Annotation

kegg
ID tcc:TCM_017503
description CCHC-type integrase
nr
ID XP_007032149.1
description CCHC-type integrase [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061EDL1
description CCHC-type integrase OS=Theobroma cacao GN=TCM_017503 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024105_010 0.0 - - CCHC-type integrase [Theobroma cacao]
2 Hb_027402_100 0.2036355913 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
3 Hb_136660_010 0.2082171552 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_003097_090 0.2086412453 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008021_010 0.2100839703 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
6 Hb_002006_060 0.2130571853 - - PREDICTED: oleosin 1-like [Jatropha curcas]
7 Hb_003581_270 0.2132000235 - - PREDICTED: protein kinase APK1A, chloroplastic-like isoform X1 [Citrus sinensis]
8 Hb_006040_070 0.2167298406 - - orf107b gene product (mitochondrion) [Beta vulgaris subsp. vulgaris]
9 Hb_000567_350 0.2195497183 - - PREDICTED: probable acyl-activating enzyme 6 [Jatropha curcas]
10 Hb_147873_010 0.2209819897 - - PREDICTED: uncharacterized protein LOC102595311 [Solanum tuberosum]
11 Hb_000369_070 0.2218373244 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
12 Hb_005496_160 0.2288366758 - - PREDICTED: calcium-transporting ATPase 1, chloroplastic [Jatropha curcas]
13 Hb_001619_160 0.2316793755 transcription factor TF Family: ERF DREB1p [Hevea brasiliensis]
14 Hb_172676_010 0.2324106615 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
15 Hb_002073_020 0.2324198569 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
16 Hb_001242_190 0.23423118 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
17 Hb_000087_100 0.234233085 - - PREDICTED: cellulose synthase-like protein D3 [Jatropha curcas]
18 Hb_001226_170 0.2363398144 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
19 Hb_012366_050 0.2378439384 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
20 Hb_006052_060 0.2382185717 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]

Gene co-expression network

sample Hb_024105_010 Hb_024105_010 Hb_027402_100 Hb_027402_100 Hb_024105_010--Hb_027402_100 Hb_136660_010 Hb_136660_010 Hb_024105_010--Hb_136660_010 Hb_003097_090 Hb_003097_090 Hb_024105_010--Hb_003097_090 Hb_008021_010 Hb_008021_010 Hb_024105_010--Hb_008021_010 Hb_002006_060 Hb_002006_060 Hb_024105_010--Hb_002006_060 Hb_003581_270 Hb_003581_270 Hb_024105_010--Hb_003581_270 Hb_132840_090 Hb_132840_090 Hb_027402_100--Hb_132840_090 Hb_003106_240 Hb_003106_240 Hb_027402_100--Hb_003106_240 Hb_004218_080 Hb_004218_080 Hb_027402_100--Hb_004218_080 Hb_000753_140 Hb_000753_140 Hb_027402_100--Hb_000753_140 Hb_000318_410 Hb_000318_410 Hb_027402_100--Hb_000318_410 Hb_011457_080 Hb_011457_080 Hb_027402_100--Hb_011457_080 Hb_147873_010 Hb_147873_010 Hb_136660_010--Hb_147873_010 Hb_060909_010 Hb_060909_010 Hb_136660_010--Hb_060909_010 Hb_001408_150 Hb_001408_150 Hb_136660_010--Hb_001408_150 Hb_126103_010 Hb_126103_010 Hb_136660_010--Hb_126103_010 Hb_001921_010 Hb_001921_010 Hb_136660_010--Hb_001921_010 Hb_012018_010 Hb_012018_010 Hb_136660_010--Hb_012018_010 Hb_008380_010 Hb_008380_010 Hb_003097_090--Hb_008380_010 Hb_000532_030 Hb_000532_030 Hb_003097_090--Hb_000532_030 Hb_009393_060 Hb_009393_060 Hb_003097_090--Hb_009393_060 Hb_181824_010 Hb_181824_010 Hb_003097_090--Hb_181824_010 Hb_001989_060 Hb_001989_060 Hb_003097_090--Hb_001989_060 Hb_011360_090 Hb_011360_090 Hb_003097_090--Hb_011360_090 Hb_005375_070 Hb_005375_070 Hb_008021_010--Hb_005375_070 Hb_001898_010 Hb_001898_010 Hb_008021_010--Hb_001898_010 Hb_002375_060 Hb_002375_060 Hb_008021_010--Hb_002375_060 Hb_002849_110 Hb_002849_110 Hb_008021_010--Hb_002849_110 Hb_023386_050 Hb_023386_050 Hb_008021_010--Hb_023386_050 Hb_172676_010 Hb_172676_010 Hb_008021_010--Hb_172676_010 Hb_006618_020 Hb_006618_020 Hb_002006_060--Hb_006618_020 Hb_006717_010 Hb_006717_010 Hb_002006_060--Hb_006717_010 Hb_001948_090 Hb_001948_090 Hb_002006_060--Hb_001948_090 Hb_005155_010 Hb_005155_010 Hb_002006_060--Hb_005155_010 Hb_061908_020 Hb_061908_020 Hb_002006_060--Hb_061908_020 Hb_002006_060--Hb_172676_010 Hb_000803_250 Hb_000803_250 Hb_003581_270--Hb_000803_250 Hb_015934_030 Hb_015934_030 Hb_003581_270--Hb_015934_030 Hb_003581_270--Hb_003097_090 Hb_002086_030 Hb_002086_030 Hb_003581_270--Hb_002086_030 Hb_000836_580 Hb_000836_580 Hb_003581_270--Hb_000836_580
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0552491 0.256886 0.113412 0.0745006 0 0.0107961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0415945 0.0439811 0.0926603

CAGE analysis