Hb_024128_020

Information

Type -
Description -
Location Contig24128: 33927-41085
Sequence    

Annotation

kegg
ID pmum:103319295
description vacuolar cation/proton exchanger 5
nr
ID XP_012078513.1
description PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
swissprot
ID Q8L783
description Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1
trembl
ID A0A067KK60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13190 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vacuolar cation proton exchanger 5-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25297: 34405-40516 , PASA_asmbl_25298: 34108-40516 , PASA_asmbl_25299: 40574-41563
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024128_020 0.0 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
2 Hb_001004_070 0.0777632811 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005144_050 0.0779310466 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
4 Hb_029879_070 0.0807448796 - - PREDICTED: phospholipase A I [Jatropha curcas]
5 Hb_001366_180 0.0808177722 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
6 Hb_006478_020 0.0828224127 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
7 Hb_029510_050 0.0834976356 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
8 Hb_006162_010 0.0841254682 - - CAZy families GH95 protein, partial [uncultured Chitinophaga sp.]
9 Hb_001390_130 0.0854171504 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
10 Hb_003025_100 0.0868397827 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
11 Hb_000329_210 0.0883507354 - - Golgi snare 12 isoform 1 [Theobroma cacao]
12 Hb_006275_070 0.0890450228 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
13 Hb_119600_070 0.0916730405 - - PREDICTED: uncharacterized protein LOC105635190 [Jatropha curcas]
14 Hb_009328_020 0.0921708267 - - conserved hypothetical protein [Ricinus communis]
15 Hb_027380_220 0.0921774094 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
16 Hb_001024_020 0.0921883024 - - hypothetical protein JCGZ_08989 [Jatropha curcas]
17 Hb_004191_020 0.0925163806 - - PREDICTED: cysteine synthase [Jatropha curcas]
18 Hb_000599_250 0.0934166619 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
19 Hb_001936_130 0.0938307392 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
20 Hb_002685_210 0.0944296498 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_024128_020 Hb_024128_020 Hb_001004_070 Hb_001004_070 Hb_024128_020--Hb_001004_070 Hb_005144_050 Hb_005144_050 Hb_024128_020--Hb_005144_050 Hb_029879_070 Hb_029879_070 Hb_024128_020--Hb_029879_070 Hb_001366_180 Hb_001366_180 Hb_024128_020--Hb_001366_180 Hb_006478_020 Hb_006478_020 Hb_024128_020--Hb_006478_020 Hb_029510_050 Hb_029510_050 Hb_024128_020--Hb_029510_050 Hb_001936_130 Hb_001936_130 Hb_001004_070--Hb_001936_130 Hb_005291_050 Hb_005291_050 Hb_001004_070--Hb_005291_050 Hb_003025_100 Hb_003025_100 Hb_001004_070--Hb_003025_100 Hb_012498_010 Hb_012498_010 Hb_001004_070--Hb_012498_010 Hb_027380_220 Hb_027380_220 Hb_001004_070--Hb_027380_220 Hb_005144_050--Hb_001366_180 Hb_025098_010 Hb_025098_010 Hb_005144_050--Hb_025098_010 Hb_185255_010 Hb_185255_010 Hb_005144_050--Hb_185255_010 Hb_002289_080 Hb_002289_080 Hb_005144_050--Hb_002289_080 Hb_000289_110 Hb_000289_110 Hb_005144_050--Hb_000289_110 Hb_000254_090 Hb_000254_090 Hb_029879_070--Hb_000254_090 Hb_029879_070--Hb_029510_050 Hb_006275_070 Hb_006275_070 Hb_029879_070--Hb_006275_070 Hb_002685_210 Hb_002685_210 Hb_029879_070--Hb_002685_210 Hb_029879_070--Hb_027380_220 Hb_029879_070--Hb_005291_050 Hb_006274_030 Hb_006274_030 Hb_001366_180--Hb_006274_030 Hb_001366_180--Hb_000289_110 Hb_000479_250 Hb_000479_250 Hb_001366_180--Hb_000479_250 Hb_001366_180--Hb_006478_020 Hb_002014_030 Hb_002014_030 Hb_001366_180--Hb_002014_030 Hb_000116_270 Hb_000116_270 Hb_006478_020--Hb_000116_270 Hb_000599_250 Hb_000599_250 Hb_006478_020--Hb_000599_250 Hb_006478_020--Hb_003025_100 Hb_000172_290 Hb_000172_290 Hb_006478_020--Hb_000172_290 Hb_001971_010 Hb_001971_010 Hb_006478_020--Hb_001971_010 Hb_029510_050--Hb_000254_090 Hb_001357_020 Hb_001357_020 Hb_029510_050--Hb_001357_020 Hb_002518_260 Hb_002518_260 Hb_029510_050--Hb_002518_260 Hb_005686_090 Hb_005686_090 Hb_029510_050--Hb_005686_090 Hb_029510_050--Hb_002685_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.2525 2.60548 5.31693 9.82162 6.50447 7.2438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.4762 7.62461 11.535 6.5144 9.83451

CAGE analysis