Hb_024404_010

Information

Type -
Description -
Location Contig24404: 1901-3126
Sequence    

Annotation

kegg
ID vvi:100248820
description F-box protein SKIP23-like
nr
ID XP_002278547.2
description PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6HU16
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0338g00010 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25488: 2327-2559
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024404_010 0.0 - - PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
2 Hb_104812_010 0.1676678667 - - PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Populus euphratica]
3 Hb_007333_030 0.2096888771 - - -
4 Hb_135611_010 0.2108483048 - - PREDICTED: uncharacterized protein LOC105142085 [Populus euphratica]
5 Hb_148909_010 0.2152081521 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
6 Hb_002255_070 0.2179853855 - - PREDICTED: isoleucine--tRNA ligase, cytoplasmic-like [Camelina sativa]
7 Hb_000187_090 0.2228578922 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
8 Hb_000251_090 0.2264979789 - - PREDICTED: two-pore potassium channel 3-like [Jatropha curcas]
9 Hb_000590_030 0.2288351697 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000041_150 0.2291163036 - - Stachyose synthase precursor, putative [Ricinus communis]
11 Hb_003878_120 0.2295100933 transcription factor TF Family: MBF1 PREDICTED: multiprotein-bridging factor 1b-like [Elaeis guineensis]
12 Hb_000792_070 0.2316470435 - - Ataxin-3, putative [Ricinus communis]
13 Hb_007603_010 0.2321527438 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000101_160 0.2333305396 - - PREDICTED: uncharacterized protein LOC105133607 isoform X1 [Populus euphratica]
15 Hb_000431_020 0.2361034788 - - hypothetical protein JCGZ_06801 [Jatropha curcas]
16 Hb_003688_170 0.2378784447 - - PREDICTED: presenilin-like protein At2g29900 isoform X2 [Cucumis sativus]
17 Hb_006452_090 0.2390970705 - - PREDICTED: eukaryotic translation initiation factor 5B [Jatropha curcas]
18 Hb_000406_040 0.2394418321 - - PREDICTED: LOW QUALITY PROTEIN: FRIGIDA-like protein 5 [Jatropha curcas]
19 Hb_001506_010 0.2443360273 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
20 Hb_000116_300 0.2448811811 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_024404_010 Hb_024404_010 Hb_104812_010 Hb_104812_010 Hb_024404_010--Hb_104812_010 Hb_007333_030 Hb_007333_030 Hb_024404_010--Hb_007333_030 Hb_135611_010 Hb_135611_010 Hb_024404_010--Hb_135611_010 Hb_148909_010 Hb_148909_010 Hb_024404_010--Hb_148909_010 Hb_002255_070 Hb_002255_070 Hb_024404_010--Hb_002255_070 Hb_000187_090 Hb_000187_090 Hb_024404_010--Hb_000187_090 Hb_104812_010--Hb_007333_030 Hb_004117_100 Hb_004117_100 Hb_104812_010--Hb_004117_100 Hb_000883_030 Hb_000883_030 Hb_104812_010--Hb_000883_030 Hb_000983_160 Hb_000983_160 Hb_104812_010--Hb_000983_160 Hb_104812_010--Hb_135611_010 Hb_001221_140 Hb_001221_140 Hb_007333_030--Hb_001221_140 Hb_000732_170 Hb_000732_170 Hb_007333_030--Hb_000732_170 Hb_003059_010 Hb_003059_010 Hb_007333_030--Hb_003059_010 Hb_000574_360 Hb_000574_360 Hb_007333_030--Hb_000574_360 Hb_000077_220 Hb_000077_220 Hb_007333_030--Hb_000077_220 Hb_135611_010--Hb_148909_010 Hb_004627_060 Hb_004627_060 Hb_135611_010--Hb_004627_060 Hb_000516_040 Hb_000516_040 Hb_135611_010--Hb_000516_040 Hb_000088_130 Hb_000088_130 Hb_135611_010--Hb_000088_130 Hb_000072_150 Hb_000072_150 Hb_135611_010--Hb_000072_150 Hb_001900_120 Hb_001900_120 Hb_135611_010--Hb_001900_120 Hb_002255_050 Hb_002255_050 Hb_148909_010--Hb_002255_050 Hb_004306_080 Hb_004306_080 Hb_148909_010--Hb_004306_080 Hb_001930_010 Hb_001930_010 Hb_148909_010--Hb_001930_010 Hb_148909_010--Hb_002255_070 Hb_148909_010--Hb_000088_130 Hb_126643_010 Hb_126643_010 Hb_002255_070--Hb_126643_010 Hb_000627_080 Hb_000627_080 Hb_002255_070--Hb_000627_080 Hb_000005_380 Hb_000005_380 Hb_002255_070--Hb_000005_380 Hb_000390_070 Hb_000390_070 Hb_002255_070--Hb_000390_070 Hb_002255_070--Hb_001930_010 Hb_000514_060 Hb_000514_060 Hb_002255_070--Hb_000514_060 Hb_000041_150 Hb_000041_150 Hb_000187_090--Hb_000041_150 Hb_001221_170 Hb_001221_170 Hb_000187_090--Hb_001221_170 Hb_003878_120 Hb_003878_120 Hb_000187_090--Hb_003878_120 Hb_153258_010 Hb_153258_010 Hb_000187_090--Hb_153258_010 Hb_000463_140 Hb_000463_140 Hb_000187_090--Hb_000463_140 Hb_006111_070 Hb_006111_070 Hb_000187_090--Hb_006111_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.29395 0.986813 0.950653 0.873396 5.31248 1.76282
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0944145 0.111391 4.1841 2.37099 1.29643

CAGE analysis