Hb_024404_020

Information

Type -
Description -
Location Contig24404: 11666-12829
Sequence    

Annotation

kegg
ID rcu:RCOM_0871250
description hypothetical protein
nr
ID XP_012065340.1
description PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
swissprot
ID Q9SHX9
description Putative F-box protein At1g65770 OS=Arabidopsis thaliana GN=At1g65770 PE=4 SV=1
trembl
ID A0A067LHR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22346 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25489: 12290-15085 , PASA_asmbl_25490: 12815-14715
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024404_020 0.0 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
2 Hb_003037_020 0.1116767643 - - hypothetical protein JCGZ_22910 [Jatropha curcas]
3 Hb_000152_320 0.1193762202 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000549_040 0.1210678836 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like isoform X1 [Jatropha curcas]
5 Hb_010368_060 0.121237618 - - conserved hypothetical protein [Ricinus communis]
6 Hb_027472_070 0.1227583969 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
7 Hb_007904_130 0.1249458253 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
8 Hb_000109_180 0.1270464928 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
9 Hb_004993_060 0.1280731701 - - -
10 Hb_003058_260 0.1298172172 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
11 Hb_001404_110 0.1302877937 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
12 Hb_000226_080 0.1311861229 - - prephenate dehydrogenase, putative [Ricinus communis]
13 Hb_002675_130 0.1313140664 - - PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit isoform X1 [Jatropha curcas]
14 Hb_020178_040 0.13252203 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006816_280 0.1352695335 - - PREDICTED: uncharacterized protein LOC105647448 isoform X2 [Jatropha curcas]
16 Hb_066920_030 0.1364018512 - - PREDICTED: adagio protein 1 [Jatropha curcas]
17 Hb_001171_060 0.1368750905 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial [Jatropha curcas]
18 Hb_000243_260 0.1368756868 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
19 Hb_005305_050 0.1374433405 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
20 Hb_000809_020 0.1374830831 desease resistance Gene Name: RPW8 leucine-rich repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_024404_020 Hb_024404_020 Hb_003037_020 Hb_003037_020 Hb_024404_020--Hb_003037_020 Hb_000152_320 Hb_000152_320 Hb_024404_020--Hb_000152_320 Hb_000549_040 Hb_000549_040 Hb_024404_020--Hb_000549_040 Hb_010368_060 Hb_010368_060 Hb_024404_020--Hb_010368_060 Hb_027472_070 Hb_027472_070 Hb_024404_020--Hb_027472_070 Hb_007904_130 Hb_007904_130 Hb_024404_020--Hb_007904_130 Hb_011883_020 Hb_011883_020 Hb_003037_020--Hb_011883_020 Hb_003228_110 Hb_003228_110 Hb_003037_020--Hb_003228_110 Hb_003058_260 Hb_003058_260 Hb_003037_020--Hb_003058_260 Hb_000243_260 Hb_000243_260 Hb_003037_020--Hb_000243_260 Hb_021510_010 Hb_021510_010 Hb_003037_020--Hb_021510_010 Hb_002071_070 Hb_002071_070 Hb_003037_020--Hb_002071_070 Hb_000505_150 Hb_000505_150 Hb_000152_320--Hb_000505_150 Hb_000140_380 Hb_000140_380 Hb_000152_320--Hb_000140_380 Hb_004993_060 Hb_004993_060 Hb_000152_320--Hb_004993_060 Hb_000753_230 Hb_000753_230 Hb_000152_320--Hb_000753_230 Hb_000252_100 Hb_000252_100 Hb_000152_320--Hb_000252_100 Hb_000173_470 Hb_000173_470 Hb_000152_320--Hb_000173_470 Hb_031910_020 Hb_031910_020 Hb_000549_040--Hb_031910_020 Hb_004117_260 Hb_004117_260 Hb_000549_040--Hb_004117_260 Hb_000549_040--Hb_004993_060 Hb_000367_260 Hb_000367_260 Hb_000549_040--Hb_000367_260 Hb_001314_070 Hb_001314_070 Hb_000549_040--Hb_001314_070 Hb_005228_070 Hb_005228_070 Hb_000549_040--Hb_005228_070 Hb_012490_080 Hb_012490_080 Hb_010368_060--Hb_012490_080 Hb_006938_080 Hb_006938_080 Hb_010368_060--Hb_006938_080 Hb_000028_180 Hb_000028_180 Hb_010368_060--Hb_000028_180 Hb_000212_310 Hb_000212_310 Hb_010368_060--Hb_000212_310 Hb_011016_050 Hb_011016_050 Hb_010368_060--Hb_011016_050 Hb_000072_120 Hb_000072_120 Hb_010368_060--Hb_000072_120 Hb_012725_060 Hb_012725_060 Hb_027472_070--Hb_012725_060 Hb_006816_280 Hb_006816_280 Hb_027472_070--Hb_006816_280 Hb_004712_130 Hb_004712_130 Hb_027472_070--Hb_004712_130 Hb_001242_130 Hb_001242_130 Hb_027472_070--Hb_001242_130 Hb_001999_090 Hb_001999_090 Hb_027472_070--Hb_001999_090 Hb_004787_050 Hb_004787_050 Hb_027472_070--Hb_004787_050 Hb_000402_190 Hb_000402_190 Hb_007904_130--Hb_000402_190 Hb_010863_010 Hb_010863_010 Hb_007904_130--Hb_010863_010 Hb_001642_070 Hb_001642_070 Hb_007904_130--Hb_001642_070 Hb_003544_030 Hb_003544_030 Hb_007904_130--Hb_003544_030 Hb_002153_030 Hb_002153_030 Hb_007904_130--Hb_002153_030 Hb_001170_030 Hb_001170_030 Hb_007904_130--Hb_001170_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.42104 11.3316 8.0826 10.0004 4.78366 5.76466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.08185 4.83272 18.6894 12.6837 6.70172

CAGE analysis