Hb_024468_010

Information

Type -
Description -
Location Contig24468: 3409-4723
Sequence    

Annotation

kegg
ID cit:102612828
description uncharacterized LOC102612828
nr
ID KDO38897.1
description hypothetical protein CISIN_1g046520mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DIQ3
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g046520mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024468_010 0.0 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
2 Hb_000086_630 0.1376607622 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
3 Hb_007044_050 0.1429273711 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
4 Hb_001619_040 0.1438760789 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
5 Hb_001604_150 0.1461248292 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Nelumbo nucifera]
6 Hb_001105_110 0.1476301272 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000001_130 0.151902197 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
8 Hb_000270_120 0.1525314766 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
9 Hb_029385_010 0.1548680292 - - CTP synthase family protein [Populus trichocarpa]
10 Hb_000251_030 0.1550471258 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
11 Hb_000226_080 0.1558248397 - - prephenate dehydrogenase, putative [Ricinus communis]
12 Hb_001341_100 0.1567131376 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
13 Hb_004993_060 0.157266581 - - -
14 Hb_031910_020 0.1597066167 - - PREDICTED: exocyst complex component SEC15A [Jatropha curcas]
15 Hb_009193_100 0.1602023861 - - hypothetical protein JCGZ_15709 [Jatropha curcas]
16 Hb_001171_050 0.160610112 - - PREDICTED: uncharacterized protein DDB_G0284459 [Jatropha curcas]
17 Hb_108329_020 0.1619188272 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
18 Hb_000215_360 0.1620273075 - - Uncharacterized protein isoform 2 [Theobroma cacao]
19 Hb_012340_060 0.1666554492 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005305_050 0.1709597366 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]

Gene co-expression network

sample Hb_024468_010 Hb_024468_010 Hb_000086_630 Hb_000086_630 Hb_024468_010--Hb_000086_630 Hb_007044_050 Hb_007044_050 Hb_024468_010--Hb_007044_050 Hb_001619_040 Hb_001619_040 Hb_024468_010--Hb_001619_040 Hb_001604_150 Hb_001604_150 Hb_024468_010--Hb_001604_150 Hb_001105_110 Hb_001105_110 Hb_024468_010--Hb_001105_110 Hb_000001_130 Hb_000001_130 Hb_024468_010--Hb_000001_130 Hb_000270_120 Hb_000270_120 Hb_000086_630--Hb_000270_120 Hb_000086_630--Hb_001105_110 Hb_001635_190 Hb_001635_190 Hb_000086_630--Hb_001635_190 Hb_158530_020 Hb_158530_020 Hb_000086_630--Hb_158530_020 Hb_001716_040 Hb_001716_040 Hb_000086_630--Hb_001716_040 Hb_002542_110 Hb_002542_110 Hb_000086_630--Hb_002542_110 Hb_010344_050 Hb_010344_050 Hb_007044_050--Hb_010344_050 Hb_004993_060 Hb_004993_060 Hb_007044_050--Hb_004993_060 Hb_001352_020 Hb_001352_020 Hb_007044_050--Hb_001352_020 Hb_000505_150 Hb_000505_150 Hb_007044_050--Hb_000505_150 Hb_001898_080 Hb_001898_080 Hb_007044_050--Hb_001898_080 Hb_007386_040 Hb_007386_040 Hb_007044_050--Hb_007386_040 Hb_000152_330 Hb_000152_330 Hb_001619_040--Hb_000152_330 Hb_000226_080 Hb_000226_080 Hb_001619_040--Hb_000226_080 Hb_001117_130 Hb_001117_130 Hb_001619_040--Hb_001117_130 Hb_005356_040 Hb_005356_040 Hb_001619_040--Hb_005356_040 Hb_000649_150 Hb_000649_150 Hb_001619_040--Hb_000649_150 Hb_002307_310 Hb_002307_310 Hb_001604_150--Hb_002307_310 Hb_031910_020 Hb_031910_020 Hb_001604_150--Hb_031910_020 Hb_002631_180 Hb_002631_180 Hb_001604_150--Hb_002631_180 Hb_000215_360 Hb_000215_360 Hb_001604_150--Hb_000215_360 Hb_000009_050 Hb_000009_050 Hb_001604_150--Hb_000009_050 Hb_004429_020 Hb_004429_020 Hb_001604_150--Hb_004429_020 Hb_001105_110--Hb_004429_020 Hb_001105_110--Hb_001635_190 Hb_001105_110--Hb_000270_120 Hb_002471_090 Hb_002471_090 Hb_001105_110--Hb_002471_090 Hb_000243_260 Hb_000243_260 Hb_001105_110--Hb_000243_260 Hb_005227_040 Hb_005227_040 Hb_000001_130--Hb_005227_040 Hb_000001_130--Hb_000215_360 Hb_012760_110 Hb_012760_110 Hb_000001_130--Hb_012760_110 Hb_000001_130--Hb_000086_630 Hb_001242_130 Hb_001242_130 Hb_000001_130--Hb_001242_130 Hb_000001_130--Hb_001604_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0250138 0.251177 0.097155 0.190085 0.0234526 0.0507126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.172187 0.180547 0.330007 0.291178 0.274916

CAGE analysis