Hb_024505_020

Information

Type -
Description -
Location Contig24505: 16474-19965
Sequence    

Annotation

kegg
ID rcu:RCOM_0922310
description Serine/threonine-protein kinase PBS1, putative (EC:2.7.11.30)
nr
ID XP_012076465.1
description PREDICTED: probable receptor-like protein kinase At1g80640 [Jatropha curcas]
swissprot
ID Q0V7T5
description Probable receptor-like protein kinase At1g80640 OS=Arabidopsis thaliana GN=At1g80640 PE=2 SV=1
trembl
ID A0A067KBM2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07113 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at1g80640

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25573: 16528-16804 , PASA_asmbl_25574: 17621-20040 , PASA_asmbl_25575: 17621-18858
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024505_020 0.0 - - PREDICTED: probable receptor-like protein kinase At1g80640 [Jatropha curcas]
2 Hb_000789_100 0.1571958067 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Jatropha curcas]
3 Hb_010968_010 0.162724075 - - Golgi snare 12 isoform 1 [Theobroma cacao]
4 Hb_000670_020 0.1633041731 - - PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]
5 Hb_001951_260 0.164918817 - - 60S ribosomal protein L32, putative [Ricinus communis]
6 Hb_002450_040 0.165057904 - - PREDICTED: DNA-directed RNA polymerases II and V subunit 6B [Vitis vinifera]
7 Hb_025236_040 0.1659306929 - - conserved hypothetical protein [Ricinus communis]
8 Hb_022132_010 0.1672419718 - - unknown [Medicago truncatula]
9 Hb_000012_020 0.1697850288 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
10 Hb_000106_130 0.1722947253 - - unnamed protein product [Vitis vinifera]
11 Hb_027043_020 0.1725343246 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000926_180 0.1726067304 - - proline synthetase associated protein, putative [Ricinus communis]
13 Hb_006634_040 0.1755582519 - - hypothetical protein VITISV_030841 [Vitis vinifera]
14 Hb_000025_050 0.1765059666 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]
15 Hb_000933_050 0.1779932992 - - protein binding protein, putative [Ricinus communis]
16 Hb_001484_060 0.1787865908 - - PREDICTED: uncharacterized protein LOC105641630 [Jatropha curcas]
17 Hb_003050_110 0.1823954131 - - PREDICTED: prefoldin subunit 6 [Populus euphratica]
18 Hb_004032_060 0.1826388668 - - elongation factor 1 gamma-like protein, partial [Ipomoea nil]
19 Hb_005656_210 0.1830143663 - - PREDICTED: uncharacterized protein LOC105637440 [Jatropha curcas]
20 Hb_001269_640 0.1831662224 - - hypothetical protein CISIN_1g032720mg [Citrus sinensis]

Gene co-expression network

sample Hb_024505_020 Hb_024505_020 Hb_000789_100 Hb_000789_100 Hb_024505_020--Hb_000789_100 Hb_010968_010 Hb_010968_010 Hb_024505_020--Hb_010968_010 Hb_000670_020 Hb_000670_020 Hb_024505_020--Hb_000670_020 Hb_001951_260 Hb_001951_260 Hb_024505_020--Hb_001951_260 Hb_002450_040 Hb_002450_040 Hb_024505_020--Hb_002450_040 Hb_025236_040 Hb_025236_040 Hb_024505_020--Hb_025236_040 Hb_000297_110 Hb_000297_110 Hb_000789_100--Hb_000297_110 Hb_000789_100--Hb_010968_010 Hb_000920_280 Hb_000920_280 Hb_000789_100--Hb_000920_280 Hb_001484_060 Hb_001484_060 Hb_000789_100--Hb_001484_060 Hb_000676_050 Hb_000676_050 Hb_000789_100--Hb_000676_050 Hb_000482_110 Hb_000482_110 Hb_000789_100--Hb_000482_110 Hb_010968_010--Hb_000676_050 Hb_000205_120 Hb_000205_120 Hb_010968_010--Hb_000205_120 Hb_002292_010 Hb_002292_010 Hb_010968_010--Hb_002292_010 Hb_001504_150 Hb_001504_150 Hb_010968_010--Hb_001504_150 Hb_002784_050 Hb_002784_050 Hb_010968_010--Hb_002784_050 Hb_010968_010--Hb_000920_280 Hb_003292_040 Hb_003292_040 Hb_000670_020--Hb_003292_040 Hb_001564_130 Hb_001564_130 Hb_000670_020--Hb_001564_130 Hb_003683_050 Hb_003683_050 Hb_000670_020--Hb_003683_050 Hb_001348_070 Hb_001348_070 Hb_000670_020--Hb_001348_070 Hb_011970_030 Hb_011970_030 Hb_000670_020--Hb_011970_030 Hb_010368_020 Hb_010368_020 Hb_000670_020--Hb_010368_020 Hb_001951_260--Hb_025236_040 Hb_000290_020 Hb_000290_020 Hb_001951_260--Hb_000290_020 Hb_004032_060 Hb_004032_060 Hb_001951_260--Hb_004032_060 Hb_000084_290 Hb_000084_290 Hb_001951_260--Hb_000084_290 Hb_007558_010 Hb_007558_010 Hb_001951_260--Hb_007558_010 Hb_001047_100 Hb_001047_100 Hb_001951_260--Hb_001047_100 Hb_001377_030 Hb_001377_030 Hb_002450_040--Hb_001377_030 Hb_000926_180 Hb_000926_180 Hb_002450_040--Hb_000926_180 Hb_007313_090 Hb_007313_090 Hb_002450_040--Hb_007313_090 Hb_001373_110 Hb_001373_110 Hb_002450_040--Hb_001373_110 Hb_002450_040--Hb_000297_110 Hb_000976_260 Hb_000976_260 Hb_002450_040--Hb_000976_260 Hb_017259_010 Hb_017259_010 Hb_025236_040--Hb_017259_010 Hb_025236_040--Hb_000084_290 Hb_000621_060 Hb_000621_060 Hb_025236_040--Hb_000621_060 Hb_003746_040 Hb_003746_040 Hb_025236_040--Hb_003746_040 Hb_025236_040--Hb_000290_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.73733 0.787568 8.80784 6.02803 10.0659 7.71557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.43045 6.82186 1.44895 1.18962 0.39264

CAGE analysis