Hb_024505_040

Information

Type -
Description -
Location Contig24505: 23513-27822
Sequence    

Annotation

kegg
ID cic:CICLE_v10010789mg
description hypothetical protein
nr
ID BAH10642.1
description homogentisate geranylgeranyl transferase [Hevea brasiliensis]
swissprot
ID Q7XB14
description Homogentisate geranylgeranyltransferase OS=Hordeum vulgare GN=HGGT PE=1 SV=1
trembl
ID B7X939
description Homogentisate geranylgeranyl transferase OS=Hevea brasiliensis GN=hggt PE=2 SV=1
Gene Ontology
ID GO:0016021
description probable homogentisate phytyltransferase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25577: 23540-27847
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024505_040 0.0 - - homogentisate geranylgeranyl transferase [Hevea brasiliensis]
2 Hb_001514_180 0.0762471195 transcription factor TF Family: M-type hypothetical protein JCGZ_16067 [Jatropha curcas]
3 Hb_000849_040 0.0884942657 - - transcription factor, putative [Ricinus communis]
4 Hb_000787_070 0.0894970706 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
5 Hb_005016_130 0.0928243619 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
6 Hb_000041_070 0.0981428006 - - hypothetical protein POPTR_0001s34870g [Populus trichocarpa]
7 Hb_000442_030 0.1000693788 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002387_060 0.1028466132 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006132_060 0.1029893371 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
10 Hb_001741_080 0.1054333337 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
11 Hb_006787_040 0.1087411222 - - polyadenylate-binding protein, putative [Ricinus communis]
12 Hb_000345_030 0.1158306429 - - REF-like stress related protein 1 [Hevea brasiliensis]
13 Hb_001102_010 0.1197754664 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
14 Hb_001606_070 0.1198730211 - - fimbrin, putative [Ricinus communis]
15 Hb_060668_010 0.1202907468 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
16 Hb_111648_010 0.1210279068 rubber biosynthesis Gene Name: REF1 rubber elongation factor [Hevea brasiliensis]
17 Hb_000345_040 0.1218947979 rubber biosynthesis Gene Name: REF4 -
18 Hb_005000_290 0.1238077001 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
19 Hb_008847_010 0.1239132142 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
20 Hb_115919_020 0.1239589076 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_024505_040 Hb_024505_040 Hb_001514_180 Hb_001514_180 Hb_024505_040--Hb_001514_180 Hb_000849_040 Hb_000849_040 Hb_024505_040--Hb_000849_040 Hb_000787_070 Hb_000787_070 Hb_024505_040--Hb_000787_070 Hb_005016_130 Hb_005016_130 Hb_024505_040--Hb_005016_130 Hb_000041_070 Hb_000041_070 Hb_024505_040--Hb_000041_070 Hb_000442_030 Hb_000442_030 Hb_024505_040--Hb_000442_030 Hb_001514_180--Hb_000041_070 Hb_001741_080 Hb_001741_080 Hb_001514_180--Hb_001741_080 Hb_111648_010 Hb_111648_010 Hb_001514_180--Hb_111648_010 Hb_060668_010 Hb_060668_010 Hb_001514_180--Hb_060668_010 Hb_000444_030 Hb_000444_030 Hb_001514_180--Hb_000444_030 Hb_000849_040--Hb_000442_030 Hb_006787_040 Hb_006787_040 Hb_000849_040--Hb_006787_040 Hb_000304_020 Hb_000304_020 Hb_000849_040--Hb_000304_020 Hb_001606_070 Hb_001606_070 Hb_000849_040--Hb_001606_070 Hb_000387_080 Hb_000387_080 Hb_000849_040--Hb_000387_080 Hb_000787_070--Hb_005016_130 Hb_115919_020 Hb_115919_020 Hb_000787_070--Hb_115919_020 Hb_006132_060 Hb_006132_060 Hb_000787_070--Hb_006132_060 Hb_001102_010 Hb_001102_010 Hb_000787_070--Hb_001102_010 Hb_000078_030 Hb_000078_030 Hb_000787_070--Hb_000078_030 Hb_005016_130--Hb_115919_020 Hb_005016_130--Hb_000078_030 Hb_005016_130--Hb_001741_080 Hb_010578_090 Hb_010578_090 Hb_005016_130--Hb_010578_090 Hb_000284_010 Hb_000284_010 Hb_005016_130--Hb_000284_010 Hb_000041_070--Hb_001741_080 Hb_004206_030 Hb_004206_030 Hb_000041_070--Hb_004206_030 Hb_000041_070--Hb_060668_010 Hb_002387_060 Hb_002387_060 Hb_000041_070--Hb_002387_060 Hb_002685_090 Hb_002685_090 Hb_000041_070--Hb_002685_090 Hb_000442_030--Hb_006787_040 Hb_000442_030--Hb_000387_080 Hb_000563_540 Hb_000563_540 Hb_000442_030--Hb_000563_540 Hb_001017_090 Hb_001017_090 Hb_000442_030--Hb_001017_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
53.8463 0.963598 0.744024 6.12925 50.7273 66.9854
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
120.723 64.4759 90.8165 7.77625 1.99648

CAGE analysis