Hb_024505_050

Information

Type transcription factor
Description TF Family: ERF
Location Contig24505: 42301-43571
Sequence    

Annotation

kegg
ID pop:POPTR_0006s27710g
description POPTRDRAFT_561963; PPLZ02 family protein
nr
ID XP_002308691.1
description PPLZ02 family protein [Populus trichocarpa]
swissprot
ID Q94AW5
description Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1
trembl
ID B9HAT9
description PPLZ02 family protein OS=Populus trichocarpa GN=POPTR_0006s27710g PE=4 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor erf003-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024505_050 0.0 transcription factor TF Family: ERF PPLZ02 family protein [Populus trichocarpa]
2 Hb_001329_240 0.1707248255 - - hypothetical protein POPTR_0002s18920g [Populus trichocarpa]
3 Hb_006816_170 0.1795850158 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
4 Hb_002489_010 0.1811068672 - - hypothetical protein JCGZ_17199 [Jatropha curcas]
5 Hb_034299_040 0.209019161 - - aldo-keto reductase, putative [Ricinus communis]
6 Hb_002131_040 0.2187220713 - - proton-dependent oligopeptide transport family protein [Populus trichocarpa]
7 Hb_004342_030 0.2202492551 - - phosphofructokinase [Hevea brasiliensis]
8 Hb_123051_020 0.2245311871 - - hypothetical protein POPTR_2151s00200g [Populus trichocarpa]
9 Hb_001247_200 0.2265521939 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
10 Hb_064885_020 0.2364023143 - - -
11 Hb_000331_150 0.2388801248 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_004871_070 0.2448050174 - - PREDICTED: uncharacterized protein LOC105632531 [Jatropha curcas]
13 Hb_002233_090 0.2452263096 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
14 Hb_000038_030 0.2467486707 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7-like [Glycine max]
15 Hb_001506_010 0.2516556299 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
16 Hb_097968_010 0.2569735768 - - hypothetical protein PRUPE_ppa001143mg [Prunus persica]
17 Hb_011218_060 0.2569998848 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
18 Hb_000101_160 0.2592943723 - - PREDICTED: uncharacterized protein LOC105133607 isoform X1 [Populus euphratica]
19 Hb_051407_010 0.2604807496 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
20 Hb_004348_010 0.2625799 - - hypothetical protein POPTR_0077s002302g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_024505_050 Hb_024505_050 Hb_001329_240 Hb_001329_240 Hb_024505_050--Hb_001329_240 Hb_006816_170 Hb_006816_170 Hb_024505_050--Hb_006816_170 Hb_002489_010 Hb_002489_010 Hb_024505_050--Hb_002489_010 Hb_034299_040 Hb_034299_040 Hb_024505_050--Hb_034299_040 Hb_002131_040 Hb_002131_040 Hb_024505_050--Hb_002131_040 Hb_004342_030 Hb_004342_030 Hb_024505_050--Hb_004342_030 Hb_001329_240--Hb_006816_170 Hb_001247_200 Hb_001247_200 Hb_001329_240--Hb_001247_200 Hb_123051_020 Hb_123051_020 Hb_001329_240--Hb_123051_020 Hb_001329_240--Hb_002489_010 Hb_001329_240--Hb_002131_040 Hb_006816_170--Hb_001247_200 Hb_006816_170--Hb_002489_010 Hb_002239_040 Hb_002239_040 Hb_006816_170--Hb_002239_040 Hb_006816_170--Hb_034299_040 Hb_000384_030 Hb_000384_030 Hb_006816_170--Hb_000384_030 Hb_002233_090 Hb_002233_090 Hb_006816_170--Hb_002233_090 Hb_002045_130 Hb_002045_130 Hb_002489_010--Hb_002045_130 Hb_000792_070 Hb_000792_070 Hb_002489_010--Hb_000792_070 Hb_004116_200 Hb_004116_200 Hb_002489_010--Hb_004116_200 Hb_003893_010 Hb_003893_010 Hb_002489_010--Hb_003893_010 Hb_002759_280 Hb_002759_280 Hb_034299_040--Hb_002759_280 Hb_004440_100 Hb_004440_100 Hb_034299_040--Hb_004440_100 Hb_051407_010 Hb_051407_010 Hb_034299_040--Hb_051407_010 Hb_000398_190 Hb_000398_190 Hb_034299_040--Hb_000398_190 Hb_001252_080 Hb_001252_080 Hb_034299_040--Hb_001252_080 Hb_109168_010 Hb_109168_010 Hb_034299_040--Hb_109168_010 Hb_002131_040--Hb_006816_170 Hb_008725_150 Hb_008725_150 Hb_002131_040--Hb_008725_150 Hb_002131_040--Hb_001247_200 Hb_002374_430 Hb_002374_430 Hb_002131_040--Hb_002374_430 Hb_000009_620 Hb_000009_620 Hb_004342_030--Hb_000009_620 Hb_004342_030--Hb_034299_040 Hb_001902_070 Hb_001902_070 Hb_004342_030--Hb_001902_070 Hb_000041_220 Hb_000041_220 Hb_004342_030--Hb_000041_220 Hb_004342_030--Hb_000398_190 Hb_000270_220 Hb_000270_220 Hb_004342_030--Hb_000270_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.28473 1.46483 0.534281 3.8773 20.8787 10.8948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.30451 3.21078 14.0171 20.4585 0.341925

CAGE analysis