Hb_024570_040

Information

Type -
Description -
Location Contig24570: 55389-60713
Sequence    

Annotation

kegg
ID rcu:RCOM_0798520
description Clathrin interactor, putative
nr
ID XP_012077334.1
description PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
swissprot
ID Q8VY07
description Clathrin interactor EPSIN 1 OS=Arabidopsis thaliana GN=EPSIN1 PE=1 SV=1
trembl
ID A0A067KQP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07705 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25595: 58941-59553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024570_040 0.0 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
2 Hb_002232_490 0.0942092724 - - PREDICTED: probable sphingolipid transporter spinster homolog 2 isoform X1 [Jatropha curcas]
3 Hb_002284_100 0.0971982463 - - ribophorin, putative [Ricinus communis]
4 Hb_000849_080 0.0978072705 - - PREDICTED: monocopper oxidase-like protein SKU5 isoform X1 [Jatropha curcas]
5 Hb_002392_020 0.1008269753 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
6 Hb_000358_210 0.1013966751 - - oligosaccharyl transferase, putative [Ricinus communis]
7 Hb_009524_030 0.103752435 - - PREDICTED: uncharacterized protein LOC105650971 [Jatropha curcas]
8 Hb_000984_140 0.1042063046 - - PREDICTED: xylulose kinase [Jatropha curcas]
9 Hb_001789_020 0.1088229619 - - PREDICTED: tripeptidyl-peptidase 2 isoform X1 [Jatropha curcas]
10 Hb_000575_100 0.1107415809 - - PREDICTED: nephrocystin-3 isoform X2 [Jatropha curcas]
11 Hb_000140_450 0.1133995834 - - PREDICTED: calreticulin-3-like [Populus euphratica]
12 Hb_003490_050 0.1143423956 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]
13 Hb_001053_080 0.1174033129 - - OsCesA3 protein [Morus notabilis]
14 Hb_001140_180 0.1179004451 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
15 Hb_003490_060 0.1220852632 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
16 Hb_000265_070 0.1234781815 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
17 Hb_010172_010 0.1236268606 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
18 Hb_003632_030 0.1243490365 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
19 Hb_000862_100 0.1252556826 - - PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]
20 Hb_005701_090 0.1265256218 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_024570_040 Hb_024570_040 Hb_002232_490 Hb_002232_490 Hb_024570_040--Hb_002232_490 Hb_002284_100 Hb_002284_100 Hb_024570_040--Hb_002284_100 Hb_000849_080 Hb_000849_080 Hb_024570_040--Hb_000849_080 Hb_002392_020 Hb_002392_020 Hb_024570_040--Hb_002392_020 Hb_000358_210 Hb_000358_210 Hb_024570_040--Hb_000358_210 Hb_009524_030 Hb_009524_030 Hb_024570_040--Hb_009524_030 Hb_003490_050 Hb_003490_050 Hb_002232_490--Hb_003490_050 Hb_002232_490--Hb_002392_020 Hb_001226_130 Hb_001226_130 Hb_002232_490--Hb_001226_130 Hb_000109_260 Hb_000109_260 Hb_002232_490--Hb_000109_260 Hb_003490_060 Hb_003490_060 Hb_002232_490--Hb_003490_060 Hb_002552_040 Hb_002552_040 Hb_002284_100--Hb_002552_040 Hb_002284_100--Hb_002392_020 Hb_002284_100--Hb_000358_210 Hb_011214_110 Hb_011214_110 Hb_002284_100--Hb_011214_110 Hb_005846_050 Hb_005846_050 Hb_002284_100--Hb_005846_050 Hb_019654_020 Hb_019654_020 Hb_002284_100--Hb_019654_020 Hb_000140_450 Hb_000140_450 Hb_000849_080--Hb_000140_450 Hb_103688_010 Hb_103688_010 Hb_000849_080--Hb_103688_010 Hb_002007_260 Hb_002007_260 Hb_000849_080--Hb_002007_260 Hb_002808_020 Hb_002808_020 Hb_000849_080--Hb_002808_020 Hb_000575_100 Hb_000575_100 Hb_000849_080--Hb_000575_100 Hb_002392_020--Hb_003490_060 Hb_002392_020--Hb_000358_210 Hb_001434_020 Hb_001434_020 Hb_002392_020--Hb_001434_020 Hb_007943_150 Hb_007943_150 Hb_002392_020--Hb_007943_150 Hb_000265_070 Hb_000265_070 Hb_000358_210--Hb_000265_070 Hb_070624_010 Hb_070624_010 Hb_000358_210--Hb_070624_010 Hb_000926_060 Hb_000926_060 Hb_000358_210--Hb_000926_060 Hb_000358_210--Hb_003490_060 Hb_009524_030--Hb_000265_070 Hb_009524_030--Hb_000358_210 Hb_000085_070 Hb_000085_070 Hb_009524_030--Hb_000085_070 Hb_000116_190 Hb_000116_190 Hb_009524_030--Hb_000116_190 Hb_007741_120 Hb_007741_120 Hb_009524_030--Hb_007741_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.928168 1.26912 3.21897 3.66143 2.40005 1.86317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.889295 0.511999 0.712676 3.611 4.54927

CAGE analysis