Hb_024621_030

Information

Type -
Description -
Location Contig24621: 33248-35169
Sequence    

Annotation

kegg
ID rcu:RCOM_0030500
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID NP_001295627.1
description tetraketide alpha-pyrone reductase 2 [Jatropha curcas]
swissprot
ID Q9CA28
description Tetraketide alpha-pyrone reductase 2 OS=Arabidopsis thaliana GN=TKPR2 PE=1 SV=1
trembl
ID C5MRG2
description Cinnamoyl-CoA reductase OS=Jatropha curcas GN=JCGZ_18323 PE=2 SV=1
Gene Ontology
ID GO:0016621
description tetraketide alpha-pyrone reductase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25603: 33975-34829
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024621_030 0.0 - - tetraketide alpha-pyrone reductase 2 [Jatropha curcas]
2 Hb_000390_260 0.1763025896 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
3 Hb_004800_170 0.2113457397 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
4 Hb_000699_170 0.2167732625 - - myosin XI, putative [Ricinus communis]
5 Hb_001045_050 0.2216453477 transcription factor TF Family: WRKY hypothetical protein POPTR_0001s33560g [Populus trichocarpa]
6 Hb_000975_150 0.2260224604 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
7 Hb_003435_060 0.2266405131 - - carbonic anhydrase, putative [Ricinus communis]
8 Hb_000140_160 0.2269270778 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
9 Hb_003992_250 0.227966547 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2-like [Glycine max]
10 Hb_000976_070 0.2327736008 - - gulonolactone oxidase, putative [Ricinus communis]
11 Hb_002006_140 0.2358564175 transcription factor TF Family: ERF hypothetical protein POPTR_0012s11030g [Populus trichocarpa]
12 Hb_004195_180 0.2404459916 - - unnamed protein product [Coffea canephora]
13 Hb_000597_110 0.2451420273 - - PREDICTED: VQ motif-containing protein 22-like [Jatropha curcas]
14 Hb_000025_430 0.2457767303 transcription factor TF Family: SRS transcription factor, putative [Ricinus communis]
15 Hb_027472_230 0.2507038075 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
16 Hb_000007_110 0.2511519948 - - PREDICTED: peroxidase 11 [Jatropha curcas]
17 Hb_000165_210 0.2515298005 - - PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
18 Hb_001190_060 0.2548745884 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
19 Hb_000300_130 0.2562883969 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
20 Hb_007894_250 0.256808715 - - hypothetical protein JCGZ_06575 [Jatropha curcas]

Gene co-expression network

sample Hb_024621_030 Hb_024621_030 Hb_000390_260 Hb_000390_260 Hb_024621_030--Hb_000390_260 Hb_004800_170 Hb_004800_170 Hb_024621_030--Hb_004800_170 Hb_000699_170 Hb_000699_170 Hb_024621_030--Hb_000699_170 Hb_001045_050 Hb_001045_050 Hb_024621_030--Hb_001045_050 Hb_000975_150 Hb_000975_150 Hb_024621_030--Hb_000975_150 Hb_003435_060 Hb_003435_060 Hb_024621_030--Hb_003435_060 Hb_003992_250 Hb_003992_250 Hb_000390_260--Hb_003992_250 Hb_000390_260--Hb_000975_150 Hb_004195_180 Hb_004195_180 Hb_000390_260--Hb_004195_180 Hb_002006_140 Hb_002006_140 Hb_000390_260--Hb_002006_140 Hb_027472_230 Hb_027472_230 Hb_000390_260--Hb_027472_230 Hb_002918_230 Hb_002918_230 Hb_004800_170--Hb_002918_230 Hb_004800_170--Hb_000975_150 Hb_000879_190 Hb_000879_190 Hb_004800_170--Hb_000879_190 Hb_004800_170--Hb_002006_140 Hb_000056_330 Hb_000056_330 Hb_004800_170--Hb_000056_330 Hb_000107_610 Hb_000107_610 Hb_000699_170--Hb_000107_610 Hb_000010_120 Hb_000010_120 Hb_000699_170--Hb_000010_120 Hb_006478_180 Hb_006478_180 Hb_000699_170--Hb_006478_180 Hb_034585_020 Hb_034585_020 Hb_000699_170--Hb_034585_020 Hb_000007_110 Hb_000007_110 Hb_000699_170--Hb_000007_110 Hb_000699_170--Hb_002006_140 Hb_000140_160 Hb_000140_160 Hb_001045_050--Hb_000140_160 Hb_001101_030 Hb_001101_030 Hb_001045_050--Hb_001101_030 Hb_001045_050--Hb_002006_140 Hb_001045_050--Hb_003435_060 Hb_000500_110 Hb_000500_110 Hb_001045_050--Hb_000500_110 Hb_000597_110 Hb_000597_110 Hb_001045_050--Hb_000597_110 Hb_003096_050 Hb_003096_050 Hb_000975_150--Hb_003096_050 Hb_007894_250 Hb_007894_250 Hb_000975_150--Hb_007894_250 Hb_000975_150--Hb_000056_330 Hb_001190_060 Hb_001190_060 Hb_000975_150--Hb_001190_060 Hb_008014_030 Hb_008014_030 Hb_003435_060--Hb_008014_030 Hb_000300_130 Hb_000300_130 Hb_003435_060--Hb_000300_130 Hb_003106_120 Hb_003106_120 Hb_003435_060--Hb_003106_120 Hb_001720_060 Hb_001720_060 Hb_003435_060--Hb_001720_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0460278 3.56278 0.199412 0.0828638 0.0297474 0.0760888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.09931 2.17447 0.92713 15.1396 0.171998

CAGE analysis