Hb_024650_010

Information

Type -
Description -
Location Contig24650: 23938-25338
Sequence    

Annotation

kegg
ID pop:POPTR_0006s09870g
description POPTRDRAFT_560885; transferase family protein
nr
ID XP_012087902.1
description PREDICTED: BAHD acyltransferase DCR [Jatropha curcas]
swissprot
ID Q9FF86
description BAHD acyltransferase DCR OS=Arabidopsis thaliana GN=DCR PE=2 SV=1
trembl
ID A0A067JKR3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25046 PE=4 SV=1
Gene Ontology
ID GO:0047672
description bahd acyltransferase dcr

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25613: 23897-25695
cDNA
(Sanger)
(ID:Location)		 006_G14.ab1: 23897-24644

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024650_010 0.0 - - PREDICTED: BAHD acyltransferase DCR [Jatropha curcas]
2 Hb_006736_040 0.05572367 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
3 Hb_003435_040 0.0679554913 - - tonoplast intrinsic protein [Hevea brasiliensis]
4 Hb_001518_030 0.0718810518 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
5 Hb_026048_030 0.0869499033 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000028_330 0.0870775825 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Pyrus x bretschneideri]
7 Hb_002725_080 0.0873977858 - - protein phosphatase 2c, putative [Ricinus communis]
8 Hb_001610_070 0.1006574257 - - hypothetical protein MIMGU_mgv1a022867mg [Erythranthe guttata]
9 Hb_028928_020 0.1009813495 - - hypothetical protein CICLE_v10018504mg [Citrus clementina]
10 Hb_006573_280 0.1027961461 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
11 Hb_033187_020 0.1049797789 - - hypothetical protein CARUB_v10004250mg, partial [Capsella rubella]
12 Hb_000574_230 0.1083306567 - - PREDICTED: leucine-rich repeat receptor protein kinase EXS-like isoform X2 [Vitis vinifera]
13 Hb_001310_080 0.1086708736 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
14 Hb_002097_130 0.1091737284 - - tonoplast intrinsic protein [Hevea brasiliensis]
15 Hb_001013_080 0.1113791644 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
16 Hb_001198_160 0.1122779954 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
17 Hb_010174_200 0.1155093056 - - PREDICTED: uncharacterized protein LOC105644743 isoform X1 [Jatropha curcas]
18 Hb_004109_110 0.116787513 - - dioxygenase family protein [Populus trichocarpa]
19 Hb_000054_140 0.1170885938 - - PREDICTED: MACPF domain-containing protein CAD1 [Jatropha curcas]
20 Hb_001913_030 0.1220421684 - - ankyrin repeat protein [Bruguiera gymnorhiza]

Gene co-expression network

sample Hb_024650_010 Hb_024650_010 Hb_006736_040 Hb_006736_040 Hb_024650_010--Hb_006736_040 Hb_003435_040 Hb_003435_040 Hb_024650_010--Hb_003435_040 Hb_001518_030 Hb_001518_030 Hb_024650_010--Hb_001518_030 Hb_026048_030 Hb_026048_030 Hb_024650_010--Hb_026048_030 Hb_000028_330 Hb_000028_330 Hb_024650_010--Hb_000028_330 Hb_002725_080 Hb_002725_080 Hb_024650_010--Hb_002725_080 Hb_006736_040--Hb_003435_040 Hb_006736_040--Hb_000028_330 Hb_001610_070 Hb_001610_070 Hb_006736_040--Hb_001610_070 Hb_001013_080 Hb_001013_080 Hb_006736_040--Hb_001013_080 Hb_006736_040--Hb_001518_030 Hb_003435_040--Hb_001013_080 Hb_000991_080 Hb_000991_080 Hb_003435_040--Hb_000991_080 Hb_003849_200 Hb_003849_200 Hb_003435_040--Hb_003849_200 Hb_003435_040--Hb_001518_030 Hb_001518_030--Hb_026048_030 Hb_001518_030--Hb_000028_330 Hb_001310_080 Hb_001310_080 Hb_001518_030--Hb_001310_080 Hb_026048_030--Hb_001310_080 Hb_113396_010 Hb_113396_010 Hb_026048_030--Hb_113396_010 Hb_026048_030--Hb_000028_330 Hb_000365_190 Hb_000365_190 Hb_026048_030--Hb_000365_190 Hb_001198_160 Hb_001198_160 Hb_000028_330--Hb_001198_160 Hb_000028_330--Hb_001610_070 Hb_029622_090 Hb_029622_090 Hb_000028_330--Hb_029622_090 Hb_004724_300 Hb_004724_300 Hb_002725_080--Hb_004724_300 Hb_010417_110 Hb_010417_110 Hb_002725_080--Hb_010417_110 Hb_000574_230 Hb_000574_230 Hb_002725_080--Hb_000574_230 Hb_009557_080 Hb_009557_080 Hb_002725_080--Hb_009557_080 Hb_006002_020 Hb_006002_020 Hb_002725_080--Hb_006002_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0184455 50.1712 28.4089 49.1193 0 0.0300798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.079764 0 6.07652 18.3565

CAGE analysis