Hb_024650_070

Information

Type -
Description -
Location Contig24650: 67621-71238
Sequence    

Annotation

kegg
ID tcc:TCM_021739
description RP non-ATPase subunit 8A
nr
ID XP_012087895.1
description PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A-like [Jatropha curcas]
swissprot
ID O24412
description 26S proteasome non-ATPase regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPN8A PE=1 SV=1
trembl
ID A0A067JY49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25043 PE=4 SV=1
Gene Ontology
ID GO:0000502
description 26s proteasome non-atpase regulatory subunit 7 homolog a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25615: 67641-71149 , PASA_asmbl_25616: 72160-72261
cDNA
(Sanger)
(ID:Location)		 010_G16.ab1: 68292-71082 , 043_L16.ab1: 68266-71033 , 044_G19.ab1: 68095-71033

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024650_070 0.0 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A-like [Jatropha curcas]
2 Hb_000329_200 0.0633798276 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
3 Hb_000045_310 0.0643812395 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
4 Hb_010361_010 0.0666408579 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
5 Hb_005551_040 0.0718215601 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
6 Hb_000566_120 0.0718495185 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
7 Hb_028396_010 0.0734934093 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
8 Hb_000431_070 0.0795056189 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
9 Hb_006573_190 0.080115449 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
10 Hb_001386_040 0.0808481861 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
11 Hb_031862_100 0.0815582855 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_014720_110 0.0832513058 - - PREDICTED: GDSL esterase/lipase At5g62930 [Tarenaya hassleriana]
13 Hb_007676_080 0.0853166274 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
14 Hb_001828_150 0.0855132372 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
15 Hb_004889_010 0.0856122272 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
16 Hb_000768_210 0.0858704793 - - PREDICTED: uncharacterized protein LOC105632522 [Jatropha curcas]
17 Hb_000317_390 0.0866848805 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
18 Hb_121729_010 0.0872450276 - - DNA binding protein, putative [Ricinus communis]
19 Hb_002014_020 0.0887836023 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
20 Hb_001189_070 0.0893658583 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_024650_070 Hb_024650_070 Hb_000329_200 Hb_000329_200 Hb_024650_070--Hb_000329_200 Hb_000045_310 Hb_000045_310 Hb_024650_070--Hb_000045_310 Hb_010361_010 Hb_010361_010 Hb_024650_070--Hb_010361_010 Hb_005551_040 Hb_005551_040 Hb_024650_070--Hb_005551_040 Hb_000566_120 Hb_000566_120 Hb_024650_070--Hb_000566_120 Hb_028396_010 Hb_028396_010 Hb_024650_070--Hb_028396_010 Hb_000329_200--Hb_010361_010 Hb_001662_150 Hb_001662_150 Hb_000329_200--Hb_001662_150 Hb_001604_060 Hb_001604_060 Hb_000329_200--Hb_001604_060 Hb_017225_020 Hb_017225_020 Hb_000329_200--Hb_017225_020 Hb_000656_240 Hb_000656_240 Hb_000329_200--Hb_000656_240 Hb_000045_310--Hb_000566_120 Hb_000045_310--Hb_028396_010 Hb_006573_190 Hb_006573_190 Hb_000045_310--Hb_006573_190 Hb_008071_020 Hb_008071_020 Hb_000045_310--Hb_008071_020 Hb_001931_010 Hb_001931_010 Hb_000045_310--Hb_001931_010 Hb_010361_010--Hb_000566_120 Hb_000599_250 Hb_000599_250 Hb_010361_010--Hb_000599_250 Hb_004934_100 Hb_004934_100 Hb_010361_010--Hb_004934_100 Hb_010361_010--Hb_000045_310 Hb_004889_010 Hb_004889_010 Hb_005551_040--Hb_004889_010 Hb_034380_020 Hb_034380_020 Hb_005551_040--Hb_034380_020 Hb_007676_080 Hb_007676_080 Hb_005551_040--Hb_007676_080 Hb_005551_040--Hb_010361_010 Hb_002014_020 Hb_002014_020 Hb_005551_040--Hb_002014_020 Hb_000566_120--Hb_006573_190 Hb_000566_120--Hb_001931_010 Hb_012799_170 Hb_012799_170 Hb_000566_120--Hb_012799_170 Hb_000390_300 Hb_000390_300 Hb_000566_120--Hb_000390_300 Hb_028396_010--Hb_008071_020 Hb_001341_150 Hb_001341_150 Hb_028396_010--Hb_001341_150 Hb_028396_010--Hb_001931_010 Hb_000189_240 Hb_000189_240 Hb_028396_010--Hb_000189_240 Hb_001279_080 Hb_001279_080 Hb_028396_010--Hb_001279_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.5262 6.50419 30.4695 31.6119 19.8176 27.3145
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.9853 52.1485 30.1246 30.3639 25.4493

CAGE analysis