Hb_024714_010

Information

Type -
Description -
Location Contig24714: 7142-9909
Sequence    

Annotation

kegg
ID tcc:TCM_004634
description HSP20-like chaperones superfamily protein isoform 1
nr
ID XP_007050893.1
description HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
swissprot
ID P0C8Z0
description Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica GN=OsI_027940 PE=1 SV=2
trembl
ID A0A061DQP9
description HSP20-like chaperones superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_004634 PE=4 SV=1
Gene Ontology
ID GO:0005829
description hsp20-like chaperones superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25687: 7187-9800 , PASA_asmbl_25688: 9153-9458
cDNA
(Sanger)
(ID:Location)		 014_D22.ab1: 7187-9768

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024714_010 0.0 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
2 Hb_008554_070 0.044403366 - - PREDICTED: peroxisome biogenesis protein 3-2 isoform X2 [Jatropha curcas]
3 Hb_020000_010 0.0490850305 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
4 Hb_002016_120 0.073816931 - - PREDICTED: uncharacterized protein OsI_027940 [Jatropha curcas]
5 Hb_006117_070 0.0762302544 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
6 Hb_025240_040 0.0780836951 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
7 Hb_024185_020 0.0782156886 - - -
8 Hb_002205_070 0.0797419577 - - PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1 [Jatropha curcas]
9 Hb_001083_020 0.0797627072 - - -
10 Hb_000230_510 0.0812702184 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
11 Hb_002759_060 0.0829239632 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
12 Hb_003964_100 0.0837388682 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
13 Hb_009838_080 0.0839477951 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
14 Hb_001360_050 0.0853614387 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
15 Hb_002477_070 0.0857717438 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
16 Hb_000170_010 0.0867697031 - - o-methyltransferase, putative [Ricinus communis]
17 Hb_000329_310 0.0884374719 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
18 Hb_001117_090 0.0887482509 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
19 Hb_005289_030 0.0891877341 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
20 Hb_001789_070 0.0900512852 - - PREDICTED: probable prolyl 4-hydroxylase 12 [Jatropha curcas]

Gene co-expression network

sample Hb_024714_010 Hb_024714_010 Hb_008554_070 Hb_008554_070 Hb_024714_010--Hb_008554_070 Hb_020000_010 Hb_020000_010 Hb_024714_010--Hb_020000_010 Hb_002016_120 Hb_002016_120 Hb_024714_010--Hb_002016_120 Hb_006117_070 Hb_006117_070 Hb_024714_010--Hb_006117_070 Hb_025240_040 Hb_025240_040 Hb_024714_010--Hb_025240_040 Hb_024185_020 Hb_024185_020 Hb_024714_010--Hb_024185_020 Hb_008554_070--Hb_002016_120 Hb_008554_070--Hb_020000_010 Hb_001235_030 Hb_001235_030 Hb_008554_070--Hb_001235_030 Hb_008554_070--Hb_025240_040 Hb_011909_100 Hb_011909_100 Hb_008554_070--Hb_011909_100 Hb_020000_010--Hb_024185_020 Hb_001360_050 Hb_001360_050 Hb_020000_010--Hb_001360_050 Hb_011671_220 Hb_011671_220 Hb_020000_010--Hb_011671_220 Hb_002759_060 Hb_002759_060 Hb_020000_010--Hb_002759_060 Hb_006541_010 Hb_006541_010 Hb_002016_120--Hb_006541_010 Hb_004800_120 Hb_004800_120 Hb_002016_120--Hb_004800_120 Hb_002016_120--Hb_001235_030 Hb_033153_060 Hb_033153_060 Hb_002016_120--Hb_033153_060 Hb_001140_060 Hb_001140_060 Hb_006117_070--Hb_001140_060 Hb_005289_030 Hb_005289_030 Hb_006117_070--Hb_005289_030 Hb_000230_510 Hb_000230_510 Hb_006117_070--Hb_000230_510 Hb_006541_030 Hb_006541_030 Hb_006117_070--Hb_006541_030 Hb_012753_160 Hb_012753_160 Hb_006117_070--Hb_012753_160 Hb_101705_030 Hb_101705_030 Hb_006117_070--Hb_101705_030 Hb_004218_110 Hb_004218_110 Hb_025240_040--Hb_004218_110 Hb_004254_120 Hb_004254_120 Hb_025240_040--Hb_004254_120 Hb_015934_070 Hb_015934_070 Hb_025240_040--Hb_015934_070 Hb_127552_030 Hb_127552_030 Hb_025240_040--Hb_127552_030 Hb_025240_040--Hb_002759_060 Hb_000421_220 Hb_000421_220 Hb_025240_040--Hb_000421_220 Hb_000206_210 Hb_000206_210 Hb_024185_020--Hb_000206_210 Hb_024185_020--Hb_004254_120 Hb_003032_040 Hb_003032_040 Hb_024185_020--Hb_003032_040 Hb_026527_030 Hb_026527_030 Hb_024185_020--Hb_026527_030 Hb_009838_080 Hb_009838_080 Hb_024185_020--Hb_009838_080 Hb_000648_110 Hb_000648_110 Hb_024185_020--Hb_000648_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
321.094 116.238 138.375 219.62 306.766 547.573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
620.57 711.136 531.482 240.422 342.851

CAGE analysis