Hb_024714_020

Information

Type -
Description -
Location Contig24714: 10424-14287
Sequence    

Annotation

kegg
ID rcu:RCOM_1177560
description WD-repeat protein, putative
nr
ID XP_002523062.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q54QU5
description WD repeat-containing protein 89 homolog OS=Dictyostelium discoideum GN=wdr89 PE=3 SV=1
trembl
ID B9SAP3
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_1177560 PE=4 SV=1
Gene Ontology
ID GO:0000398
description wd repeat-containing protein 89 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25687: 7187-9800 , PASA_asmbl_25688: 9153-9458 , PASA_asmbl_25689: 12729-14203
cDNA
(Sanger)
(ID:Location)		 014_D22.ab1: 7187-9768

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024714_020 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_010222_030 0.0643454699 - - PREDICTED: uncharacterized protein LOC105647641 [Jatropha curcas]
3 Hb_009411_020 0.067619439 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
4 Hb_000462_150 0.0823319966 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
5 Hb_003006_060 0.0840918404 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
6 Hb_185467_010 0.0890601398 - - -
7 Hb_000230_330 0.0892893572 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
8 Hb_004324_280 0.0894073818 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
9 Hb_001969_040 0.0901665031 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
10 Hb_000156_140 0.0915882691 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
11 Hb_000186_280 0.0918245348 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
12 Hb_041091_010 0.0918663428 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
13 Hb_000076_080 0.0921230866 - - PREDICTED: protein MOS2 [Jatropha curcas]
14 Hb_010222_080 0.0925101171 - - PREDICTED: pentatricopeptide repeat-containing protein At2g06000 [Jatropha curcas]
15 Hb_004678_060 0.0927543966 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
16 Hb_001504_160 0.0929575212 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
17 Hb_000034_050 0.0932961215 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
18 Hb_000088_200 0.0941417967 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
19 Hb_002874_070 0.0949079922 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
20 Hb_000976_320 0.0950640857 - - UPF0061 protein azo1574 [Morus notabilis]

Gene co-expression network

sample Hb_024714_020 Hb_024714_020 Hb_010222_030 Hb_010222_030 Hb_024714_020--Hb_010222_030 Hb_009411_020 Hb_009411_020 Hb_024714_020--Hb_009411_020 Hb_000462_150 Hb_000462_150 Hb_024714_020--Hb_000462_150 Hb_003006_060 Hb_003006_060 Hb_024714_020--Hb_003006_060 Hb_185467_010 Hb_185467_010 Hb_024714_020--Hb_185467_010 Hb_000230_330 Hb_000230_330 Hb_024714_020--Hb_000230_330 Hb_001863_110 Hb_001863_110 Hb_010222_030--Hb_001863_110 Hb_000034_050 Hb_000034_050 Hb_010222_030--Hb_000034_050 Hb_010222_030--Hb_000230_330 Hb_010222_080 Hb_010222_080 Hb_010222_030--Hb_010222_080 Hb_001584_290 Hb_001584_290 Hb_010222_030--Hb_001584_290 Hb_000156_140 Hb_000156_140 Hb_009411_020--Hb_000156_140 Hb_001616_090 Hb_001616_090 Hb_009411_020--Hb_001616_090 Hb_002774_070 Hb_002774_070 Hb_009411_020--Hb_002774_070 Hb_001969_040 Hb_001969_040 Hb_009411_020--Hb_001969_040 Hb_000186_280 Hb_000186_280 Hb_009411_020--Hb_000186_280 Hb_003384_030 Hb_003384_030 Hb_000462_150--Hb_003384_030 Hb_000462_150--Hb_001969_040 Hb_002818_040 Hb_002818_040 Hb_000462_150--Hb_002818_040 Hb_000462_150--Hb_000230_330 Hb_001584_110 Hb_001584_110 Hb_000462_150--Hb_001584_110 Hb_000001_180 Hb_000001_180 Hb_000462_150--Hb_000001_180 Hb_002942_080 Hb_002942_080 Hb_003006_060--Hb_002942_080 Hb_004678_060 Hb_004678_060 Hb_003006_060--Hb_004678_060 Hb_000104_080 Hb_000104_080 Hb_003006_060--Hb_000104_080 Hb_010423_020 Hb_010423_020 Hb_003006_060--Hb_010423_020 Hb_008143_030 Hb_008143_030 Hb_003006_060--Hb_008143_030 Hb_009265_080 Hb_009265_080 Hb_003006_060--Hb_009265_080 Hb_000721_010 Hb_000721_010 Hb_185467_010--Hb_000721_010 Hb_004993_010 Hb_004993_010 Hb_185467_010--Hb_004993_010 Hb_000046_300 Hb_000046_300 Hb_185467_010--Hb_000046_300 Hb_001936_050 Hb_001936_050 Hb_185467_010--Hb_001936_050 Hb_002874_070 Hb_002874_070 Hb_185467_010--Hb_002874_070 Hb_000230_330--Hb_001584_110 Hb_000390_060 Hb_000390_060 Hb_000230_330--Hb_000390_060 Hb_001504_160 Hb_001504_160 Hb_000230_330--Hb_001504_160 Hb_003434_060 Hb_003434_060 Hb_000230_330--Hb_003434_060 Hb_000076_080 Hb_000076_080 Hb_000230_330--Hb_000076_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.7013 9.4167 9.67552 8.91547 32.7477 38.4173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.3768 16.0611 18.7855 9.93625 6.23822

CAGE analysis