Hb_024714_030

Information

Type -
Description -
Location Contig24714: 15339-17297
Sequence    

Annotation

kegg
ID rcu:RCOM_1177550
description Small nuclear ribonucleoprotein SM D3, putative
nr
ID XP_012082737.1
description PREDICTED: sm-like protein LSM4 [Jatropha curcas]
swissprot
ID Q43582
description Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID B9SAP2
description Small nuclear ribonucleoprotein SM D3, putative OS=Ricinus communis GN=RCOM_1177550 PE=4 SV=1
Gene Ontology
ID GO:0005681
description probable u6 snrna-associated sm-like protein lsm4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25690: 14364-17338 , PASA_asmbl_25691: 16549-17308 , PASA_asmbl_25692: 16362-17301
cDNA
(Sanger)
(ID:Location)		 006_N17.ab1: 14451-17338 , 017_J06.ab1: 14454-17338

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024714_030 0.0 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
2 Hb_002014_080 0.0676081569 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
3 Hb_000671_100 0.0716326545 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
4 Hb_003638_140 0.0766465774 - - protein binding protein, putative [Ricinus communis]
5 Hb_014568_030 0.0768307183 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
6 Hb_002215_050 0.0777433101 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
7 Hb_035524_030 0.0854362603 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003494_240 0.0862102421 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
9 Hb_001369_060 0.0911204539 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
10 Hb_010298_010 0.0922505104 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
11 Hb_005288_120 0.0929980594 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
12 Hb_000365_360 0.0952647607 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
13 Hb_005735_030 0.0955937748 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000390_060 0.0960689193 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
15 Hb_033642_020 0.0961391612 - - hypothetical protein JCGZ_19094 [Jatropha curcas]
16 Hb_000703_090 0.0969971485 - - PREDICTED: 14-3-3-like protein D [Cucumis sativus]
17 Hb_000077_050 0.0971814874 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_001902_050 0.0992595167 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
19 Hb_003352_050 0.102954247 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
20 Hb_000307_200 0.1051996939 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]

Gene co-expression network

sample Hb_024714_030 Hb_024714_030 Hb_002014_080 Hb_002014_080 Hb_024714_030--Hb_002014_080 Hb_000671_100 Hb_000671_100 Hb_024714_030--Hb_000671_100 Hb_003638_140 Hb_003638_140 Hb_024714_030--Hb_003638_140 Hb_014568_030 Hb_014568_030 Hb_024714_030--Hb_014568_030 Hb_002215_050 Hb_002215_050 Hb_024714_030--Hb_002215_050 Hb_035524_030 Hb_035524_030 Hb_024714_030--Hb_035524_030 Hb_000012_090 Hb_000012_090 Hb_002014_080--Hb_000012_090 Hb_002014_080--Hb_014568_030 Hb_000365_360 Hb_000365_360 Hb_002014_080--Hb_000365_360 Hb_002014_080--Hb_000671_100 Hb_002014_080--Hb_002215_050 Hb_010298_010 Hb_010298_010 Hb_000671_100--Hb_010298_010 Hb_000671_100--Hb_035524_030 Hb_000671_100--Hb_014568_030 Hb_009558_020 Hb_009558_020 Hb_000671_100--Hb_009558_020 Hb_003638_140--Hb_002215_050 Hb_001369_060 Hb_001369_060 Hb_003638_140--Hb_001369_060 Hb_011496_010 Hb_011496_010 Hb_003638_140--Hb_011496_010 Hb_000608_120 Hb_000608_120 Hb_003638_140--Hb_000608_120 Hb_001804_060 Hb_001804_060 Hb_003638_140--Hb_001804_060 Hb_000077_050 Hb_000077_050 Hb_014568_030--Hb_000077_050 Hb_001584_110 Hb_001584_110 Hb_014568_030--Hb_001584_110 Hb_001855_010 Hb_001855_010 Hb_014568_030--Hb_001855_010 Hb_011282_030 Hb_011282_030 Hb_014568_030--Hb_011282_030 Hb_002215_050--Hb_001369_060 Hb_033491_010 Hb_033491_010 Hb_002215_050--Hb_033491_010 Hb_000784_090 Hb_000784_090 Hb_002215_050--Hb_000784_090 Hb_001214_130 Hb_001214_130 Hb_002215_050--Hb_001214_130 Hb_019613_020 Hb_019613_020 Hb_035524_030--Hb_019613_020 Hb_000085_280 Hb_000085_280 Hb_035524_030--Hb_000085_280 Hb_005288_120 Hb_005288_120 Hb_035524_030--Hb_005288_120 Hb_127979_010 Hb_127979_010 Hb_035524_030--Hb_127979_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
302.58 77.6919 30.1094 88.0572 313.139 540.455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
254.991 155.01 215.123 57.7971 34.028

CAGE analysis