Hb_024714_090

Information

Type rubber biosynthesis
Description Gene Name: SRPP3
Location Contig24714: 65348-66313
Sequence    

Annotation

kegg
ID rcu:RCOM_1439890
description Small rubber particle protein, putative
nr
ID XP_012082731.1
description PREDICTED: stress-related protein [Jatropha curcas]
swissprot
ID Q9SW70
description Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1
trembl
ID A0A067JZA9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13909 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25704: 65337-66167 , PASA_asmbl_25705: 65180-66330 , PASA_asmbl_25706: 65180-66330
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024714_090 0.0 rubber biosynthesis Gene Name: SRPP3 PREDICTED: stress-related protein [Jatropha curcas]
2 Hb_001085_160 0.0786816109 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
3 Hb_000027_160 0.0898758176 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
4 Hb_000213_020 0.0990824094 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001571_080 0.1146704647 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
6 Hb_001633_160 0.1159162054 - - PREDICTED: zerumbone synthase-like isoform X2 [Jatropha curcas]
7 Hb_002203_010 0.1171803645 - - PREDICTED: kinesin-like protein KIF18B isoform X1 [Vitis vinifera]
8 Hb_004005_060 0.1178925609 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
9 Hb_000956_050 0.120959214 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
10 Hb_007474_020 0.1212521005 - - multicopper oxidase, putative [Ricinus communis]
11 Hb_000830_010 0.123658584 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001307_020 0.1272728371 - - electron carrier, putative [Ricinus communis]
13 Hb_000349_250 0.1300234881 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g12460 [Jatropha curcas]
14 Hb_000392_170 0.1302105316 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
15 Hb_000300_190 0.1302257893 - - PREDICTED: uncharacterized protein LOC105632566 [Jatropha curcas]
16 Hb_003248_030 0.1324432937 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
17 Hb_000862_050 0.1375426262 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
18 Hb_002818_060 0.1396911871 - - zinc finger protein, putative [Ricinus communis]
19 Hb_000809_130 0.1408794049 - - PREDICTED: peroxidase 10 isoform X3 [Jatropha curcas]
20 Hb_012753_150 0.1411989174 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]

Gene co-expression network

sample Hb_024714_090 Hb_024714_090 Hb_001085_160 Hb_001085_160 Hb_024714_090--Hb_001085_160 Hb_000027_160 Hb_000027_160 Hb_024714_090--Hb_000027_160 Hb_000213_020 Hb_000213_020 Hb_024714_090--Hb_000213_020 Hb_001571_080 Hb_001571_080 Hb_024714_090--Hb_001571_080 Hb_001633_160 Hb_001633_160 Hb_024714_090--Hb_001633_160 Hb_002203_010 Hb_002203_010 Hb_024714_090--Hb_002203_010 Hb_001085_160--Hb_001571_080 Hb_001085_160--Hb_000213_020 Hb_000830_010 Hb_000830_010 Hb_001085_160--Hb_000830_010 Hb_004005_060 Hb_004005_060 Hb_001085_160--Hb_004005_060 Hb_005568_140 Hb_005568_140 Hb_001085_160--Hb_005568_140 Hb_000349_250 Hb_000349_250 Hb_000027_160--Hb_000349_250 Hb_002053_180 Hb_002053_180 Hb_000027_160--Hb_002053_180 Hb_000027_160--Hb_001571_080 Hb_000086_470 Hb_000086_470 Hb_000027_160--Hb_000086_470 Hb_000905_100 Hb_000905_100 Hb_000027_160--Hb_000905_100 Hb_000213_020--Hb_004005_060 Hb_000213_020--Hb_002203_010 Hb_000933_040 Hb_000933_040 Hb_000213_020--Hb_000933_040 Hb_000878_080 Hb_000878_080 Hb_000213_020--Hb_000878_080 Hb_001571_080--Hb_005568_140 Hb_002918_220 Hb_002918_220 Hb_001571_080--Hb_002918_220 Hb_007237_020 Hb_007237_020 Hb_001571_080--Hb_007237_020 Hb_027337_010 Hb_027337_010 Hb_001571_080--Hb_027337_010 Hb_001307_020 Hb_001307_020 Hb_001633_160--Hb_001307_020 Hb_001633_160--Hb_001085_160 Hb_001633_160--Hb_000027_160 Hb_000256_030 Hb_000256_030 Hb_001633_160--Hb_000256_030 Hb_000175_300 Hb_000175_300 Hb_001633_160--Hb_000175_300 Hb_000359_100 Hb_000359_100 Hb_002203_010--Hb_000359_100 Hb_001349_050 Hb_001349_050 Hb_002203_010--Hb_001349_050 Hb_002203_010--Hb_004005_060 Hb_002818_060 Hb_002818_060 Hb_002203_010--Hb_002818_060 Hb_002203_010--Hb_000878_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.231256 4.33573 28.7003 17.6474 0.0271135 0.0511121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.398963 0.313708 0.0946738 1.22697 3.99271

CAGE analysis