Hb_024714_110

Information

Type -
Description -
Location Contig24714: 71329-71895
Sequence    

Annotation

kegg
ID rcu:RCOM_1439860
description peripheral-type benzodiazepine receptor, putative
nr
ID XP_012082728.1
description PREDICTED: translocator protein homolog [Jatropha curcas]
swissprot
ID O82245
description Translocator protein homolog OS=Arabidopsis thaliana GN=TSPO PE=1 SV=1
trembl
ID A0A067JW57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13908 PE=4 SV=1
Gene Ontology
ID GO:0005795
description translocator protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25711: 71152-71816
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024714_110 0.0 - - PREDICTED: translocator protein homolog [Jatropha curcas]
2 Hb_000749_290 0.1211674351 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
3 Hb_008895_020 0.1571040731 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
4 Hb_001715_060 0.1595382662 - - PREDICTED: gibberellin 3-beta-dioxygenase 1 [Jatropha curcas]
5 Hb_029977_030 0.1597269159 transcription factor TF Family: bZIP conserved hypothetical protein [Ricinus communis]
6 Hb_006651_030 0.1666864299 - - unnamed protein product [Homo sapiens]
7 Hb_004450_020 0.1668047305 - - serine-threonine protein kinase, putative [Ricinus communis]
8 Hb_059275_010 0.1684733984 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
9 Hb_007357_010 0.1703441412 - - cytochrome P450, putative [Ricinus communis]
10 Hb_124677_090 0.1722045021 - - conserved hypothetical protein [Ricinus communis]
11 Hb_039946_060 0.173906808 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
12 Hb_000928_280 0.175443351 - - hypothetical protein VITISV_005300 [Vitis vinifera]
13 Hb_000193_180 0.1766267165 transcription factor TF Family: MYB PREDICTED: transcription factor MYB28-like [Jatropha curcas]
14 Hb_001638_340 0.1782126389 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001059_110 0.1790860927 - - PREDICTED: uncharacterized protein LOC105649457 [Jatropha curcas]
16 Hb_000996_070 0.1825113359 - - unnamed protein product [Vitis vinifera]
17 Hb_000077_280 0.1825527469 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_000441_130 0.1826552096 - - PREDICTED: homeobox-leucine zipper protein HOX32 [Vitis vinifera]
19 Hb_000256_030 0.1876903164 - - transferase, putative [Ricinus communis]
20 Hb_001477_060 0.188501792 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_024714_110 Hb_024714_110 Hb_000749_290 Hb_000749_290 Hb_024714_110--Hb_000749_290 Hb_008895_020 Hb_008895_020 Hb_024714_110--Hb_008895_020 Hb_001715_060 Hb_001715_060 Hb_024714_110--Hb_001715_060 Hb_029977_030 Hb_029977_030 Hb_024714_110--Hb_029977_030 Hb_006651_030 Hb_006651_030 Hb_024714_110--Hb_006651_030 Hb_004450_020 Hb_004450_020 Hb_024714_110--Hb_004450_020 Hb_000077_280 Hb_000077_280 Hb_000749_290--Hb_000077_280 Hb_039946_060 Hb_039946_060 Hb_000749_290--Hb_039946_060 Hb_011574_020 Hb_011574_020 Hb_000749_290--Hb_011574_020 Hb_000749_290--Hb_008895_020 Hb_000193_180 Hb_000193_180 Hb_000749_290--Hb_000193_180 Hb_001638_340 Hb_001638_340 Hb_008895_020--Hb_001638_340 Hb_008895_020--Hb_006651_030 Hb_008895_020--Hb_029977_030 Hb_124677_090 Hb_124677_090 Hb_008895_020--Hb_124677_090 Hb_001477_060 Hb_001477_060 Hb_008895_020--Hb_001477_060 Hb_059275_010 Hb_059275_010 Hb_008895_020--Hb_059275_010 Hb_001715_060--Hb_059275_010 Hb_001715_060--Hb_001638_340 Hb_007357_010 Hb_007357_010 Hb_001715_060--Hb_007357_010 Hb_001715_060--Hb_029977_030 Hb_001715_060--Hb_008895_020 Hb_001715_060--Hb_124677_090 Hb_029977_030--Hb_006651_030 Hb_096027_010 Hb_096027_010 Hb_029977_030--Hb_096027_010 Hb_029977_030--Hb_059275_010 Hb_011853_020 Hb_011853_020 Hb_029977_030--Hb_011853_020 Hb_011909_050 Hb_011909_050 Hb_006651_030--Hb_011909_050 Hb_008406_060 Hb_008406_060 Hb_006651_030--Hb_008406_060 Hb_001766_130 Hb_001766_130 Hb_006651_030--Hb_001766_130 Hb_161103_010 Hb_161103_010 Hb_006651_030--Hb_161103_010 Hb_000012_350 Hb_000012_350 Hb_004450_020--Hb_000012_350 Hb_004450_020--Hb_001638_340 Hb_001794_040 Hb_001794_040 Hb_004450_020--Hb_001794_040 Hb_004450_020--Hb_011574_020 Hb_002518_220 Hb_002518_220 Hb_004450_020--Hb_002518_220 Hb_004450_020--Hb_000749_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.549013 1.38177 1.69673 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109972 0.0864181 0 0 0.662604

CAGE analysis