Hb_024758_020

Information

Type -
Description -
Location Contig24758: 12469-16608
Sequence    

Annotation

kegg
ID rcu:RCOM_1588020
description acyl-CoA-binding protein, acbp, putative
nr
ID AFZ62129.1
description acyl-CoA binding protein 3B [Vernicia fordii]
swissprot
ID Q9STX1
description Acyl-CoA-binding domain-containing protein 3 OS=Arabidopsis thaliana GN=ACBP3 PE=1 SV=1
trembl
ID K9ZUG8
description Acyl-CoA binding protein 3B OS=Vernicia fordii GN=ACBP3B PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25749: 12553-16593 , PASA_asmbl_25750: 12541-16555
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024758_020 0.0 - - acyl-CoA binding protein 3B [Vernicia fordii]
2 Hb_002849_050 0.0816562349 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
3 Hb_158845_060 0.0834087341 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
4 Hb_005298_020 0.0865151923 - - PREDICTED: anaphase-promoting complex subunit 2 [Jatropha curcas]
5 Hb_000297_030 0.0891457282 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
6 Hb_032823_020 0.0960223281 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003964_110 0.0993448819 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
8 Hb_000661_220 0.1003267767 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 55-like [Jatropha curcas]
9 Hb_000317_110 0.100560313 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial isoform X2 [Jatropha curcas]
10 Hb_000172_360 0.1033049738 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
11 Hb_002045_170 0.1063079987 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
12 Hb_002809_160 0.1070600779 - - PREDICTED: protein FAM63A [Jatropha curcas]
13 Hb_002687_060 0.1082739397 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
14 Hb_005833_030 0.1082992716 - - PREDICTED: uncharacterized membrane protein At1g16860 [Jatropha curcas]
15 Hb_002317_010 0.1088185836 - - PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Jatropha curcas]
16 Hb_080147_050 0.1088712225 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
17 Hb_000248_100 0.1091334979 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
18 Hb_005741_040 0.1093021023 - - PREDICTED: probable receptor-like protein kinase At1g49730 [Jatropha curcas]
19 Hb_052135_020 0.10982991 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
20 Hb_001677_100 0.1105639255 - - delta1-pyrroline-5-carboxylate synthase [Manihot esculenta]

Gene co-expression network

sample Hb_024758_020 Hb_024758_020 Hb_002849_050 Hb_002849_050 Hb_024758_020--Hb_002849_050 Hb_158845_060 Hb_158845_060 Hb_024758_020--Hb_158845_060 Hb_005298_020 Hb_005298_020 Hb_024758_020--Hb_005298_020 Hb_000297_030 Hb_000297_030 Hb_024758_020--Hb_000297_030 Hb_032823_020 Hb_032823_020 Hb_024758_020--Hb_032823_020 Hb_003964_110 Hb_003964_110 Hb_024758_020--Hb_003964_110 Hb_005741_040 Hb_005741_040 Hb_002849_050--Hb_005741_040 Hb_011188_010 Hb_011188_010 Hb_002849_050--Hb_011188_010 Hb_009296_020 Hb_009296_020 Hb_002849_050--Hb_009296_020 Hb_001279_020 Hb_001279_020 Hb_002849_050--Hb_001279_020 Hb_001414_010 Hb_001414_010 Hb_002849_050--Hb_001414_010 Hb_158845_060--Hb_003964_110 Hb_000599_360 Hb_000599_360 Hb_158845_060--Hb_000599_360 Hb_158845_060--Hb_000297_030 Hb_080147_050 Hb_080147_050 Hb_158845_060--Hb_080147_050 Hb_001085_080 Hb_001085_080 Hb_158845_060--Hb_001085_080 Hb_021977_010 Hb_021977_010 Hb_158845_060--Hb_021977_010 Hb_002374_210 Hb_002374_210 Hb_005298_020--Hb_002374_210 Hb_005298_020--Hb_158845_060 Hb_005298_020--Hb_080147_050 Hb_002007_260 Hb_002007_260 Hb_005298_020--Hb_002007_260 Hb_007894_160 Hb_007894_160 Hb_005298_020--Hb_007894_160 Hb_006468_010 Hb_006468_010 Hb_000297_030--Hb_006468_010 Hb_016461_020 Hb_016461_020 Hb_000297_030--Hb_016461_020 Hb_000890_160 Hb_000890_160 Hb_000297_030--Hb_000890_160 Hb_000046_600 Hb_000046_600 Hb_000297_030--Hb_000046_600 Hb_008054_040 Hb_008054_040 Hb_032823_020--Hb_008054_040 Hb_008206_080 Hb_008206_080 Hb_032823_020--Hb_008206_080 Hb_000878_160 Hb_000878_160 Hb_032823_020--Hb_000878_160 Hb_003093_040 Hb_003093_040 Hb_032823_020--Hb_003093_040 Hb_012633_050 Hb_012633_050 Hb_032823_020--Hb_012633_050 Hb_008165_020 Hb_008165_020 Hb_003964_110--Hb_008165_020 Hb_000227_320 Hb_000227_320 Hb_003964_110--Hb_000227_320 Hb_000331_100 Hb_000331_100 Hb_003964_110--Hb_000331_100 Hb_003964_110--Hb_001414_010 Hb_000665_260 Hb_000665_260 Hb_003964_110--Hb_000665_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.23085 22.2121 37.0516 27.3725 11.8878 12.7015
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.53016 4.59766 5.61349 30.9525 21.8203

CAGE analysis