Hb_024828_040

Information

Type -
Description -
Location Contig24828: 44060-44464
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25837: 44539-44814
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024828_040 0.0 - - -
2 Hb_166786_030 0.2138651541 - - PREDICTED: uncharacterized protein LOC105775425 [Gossypium raimondii]
3 Hb_003859_010 0.2197507293 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
4 Hb_075812_010 0.2282144843 - - hypothetical protein POPTR_0005s04330g [Populus trichocarpa]
5 Hb_001565_100 0.242868035 - - unnamed protein product [Coffea canephora]
6 Hb_004534_020 0.2486544984 - - PREDICTED: cysteine proteinase inhibitor B [Jatropha curcas]
7 Hb_000816_110 0.2497745275 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
8 Hb_001523_010 0.2521458368 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_25496 [Jatropha curcas]
9 Hb_001635_220 0.2555067752 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
10 Hb_001178_020 0.2592202643 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 3 [Jatropha curcas]
11 Hb_002007_290 0.2615078587 - - -
12 Hb_000172_530 0.2615329317 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]
13 Hb_000038_130 0.2640445445 - - -
14 Hb_005016_030 0.2647800228 - - hypothetical protein JCGZ_16549 [Jatropha curcas]
15 Hb_003777_070 0.2656016714 - - -
16 Hb_007904_190 0.2662300905 - - -
17 Hb_074683_020 0.2672202705 - - PREDICTED: 60S ribosomal protein L27-3 [Jatropha curcas]
18 Hb_000454_030 0.2689808392 - - -
19 Hb_176117_010 0.2689947301 - - Cold-inducible RNA-binding protein [Morus notabilis]
20 Hb_007809_060 0.2691374825 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]

Gene co-expression network

sample Hb_024828_040 Hb_024828_040 Hb_166786_030 Hb_166786_030 Hb_024828_040--Hb_166786_030 Hb_003859_010 Hb_003859_010 Hb_024828_040--Hb_003859_010 Hb_075812_010 Hb_075812_010 Hb_024828_040--Hb_075812_010 Hb_001565_100 Hb_001565_100 Hb_024828_040--Hb_001565_100 Hb_004534_020 Hb_004534_020 Hb_024828_040--Hb_004534_020 Hb_000816_110 Hb_000816_110 Hb_024828_040--Hb_000816_110 Hb_001230_010 Hb_001230_010 Hb_166786_030--Hb_001230_010 Hb_001178_020 Hb_001178_020 Hb_166786_030--Hb_001178_020 Hb_002007_290 Hb_002007_290 Hb_166786_030--Hb_002007_290 Hb_004254_040 Hb_004254_040 Hb_166786_030--Hb_004254_040 Hb_001635_220 Hb_001635_220 Hb_166786_030--Hb_001635_220 Hb_001523_010 Hb_001523_010 Hb_003859_010--Hb_001523_010 Hb_000466_060 Hb_000466_060 Hb_003859_010--Hb_000466_060 Hb_005217_020 Hb_005217_020 Hb_003859_010--Hb_005217_020 Hb_000213_060 Hb_000213_060 Hb_003859_010--Hb_000213_060 Hb_002837_070 Hb_002837_070 Hb_003859_010--Hb_002837_070 Hb_000441_230 Hb_000441_230 Hb_003859_010--Hb_000441_230 Hb_000853_370 Hb_000853_370 Hb_075812_010--Hb_000853_370 Hb_000926_270 Hb_000926_270 Hb_075812_010--Hb_000926_270 Hb_000117_040 Hb_000117_040 Hb_075812_010--Hb_000117_040 Hb_004223_230 Hb_004223_230 Hb_075812_010--Hb_004223_230 Hb_004295_020 Hb_004295_020 Hb_075812_010--Hb_004295_020 Hb_050964_020 Hb_050964_020 Hb_075812_010--Hb_050964_020 Hb_002078_430 Hb_002078_430 Hb_001565_100--Hb_002078_430 Hb_011609_030 Hb_011609_030 Hb_001565_100--Hb_011609_030 Hb_000714_020 Hb_000714_020 Hb_001565_100--Hb_000714_020 Hb_074683_020 Hb_074683_020 Hb_001565_100--Hb_074683_020 Hb_003849_080 Hb_003849_080 Hb_001565_100--Hb_003849_080 Hb_000038_130 Hb_000038_130 Hb_001565_100--Hb_000038_130 Hb_004534_020--Hb_003859_010 Hb_137543_010 Hb_137543_010 Hb_004534_020--Hb_137543_010 Hb_007382_040 Hb_007382_040 Hb_004534_020--Hb_007382_040 Hb_004534_020--Hb_001565_100 Hb_002609_100 Hb_002609_100 Hb_004534_020--Hb_002609_100 Hb_004534_020--Hb_166786_030 Hb_000816_110--Hb_075812_010 Hb_000816_110--Hb_004223_230 Hb_003777_070 Hb_003777_070 Hb_000816_110--Hb_003777_070 Hb_138413_010 Hb_138413_010 Hb_000816_110--Hb_138413_010 Hb_005730_020 Hb_005730_020 Hb_000816_110--Hb_005730_020 Hb_010098_080 Hb_010098_080 Hb_000816_110--Hb_010098_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.1153 6.88306 0 0 17.0633 35.8465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.07473 20.3689 2.66024 0 0

CAGE analysis