Hb_024836_010

Information

Type -
Description -
Location Contig24836: 17903-20998
Sequence    

Annotation

kegg
ID rcu:RCOM_0669590
description Rho GDP-dissociation inhibitor, putative
nr
ID XP_002520560.1
description Rho GDP-dissociation inhibitor, putative [Ricinus communis]
swissprot
ID Q9SFC6
description Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1
trembl
ID B9S3J1
description Rho GDP-dissociation inhibitor, putative OS=Ricinus communis GN=RCOM_0669590 PE=4 SV=1
Gene Ontology
ID GO:0005737
description rho gdp-dissociation inhibitor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25848: 17907-20794
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024836_010 0.0 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
2 Hb_002485_030 0.1238164759 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
3 Hb_003688_040 0.1256714249 - - -
4 Hb_000300_690 0.1323632685 - - hypothetical protein JCGZ_02719 [Jatropha curcas]
5 Hb_006405_050 0.1326121988 - - PREDICTED: stomatal closure-related actin-binding protein 2-like [Jatropha curcas]
6 Hb_001817_150 0.1358381764 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
7 Hb_001085_260 0.1423551833 - - PREDICTED: uncharacterized protein LOC105633184 [Jatropha curcas]
8 Hb_003760_030 0.1518457648 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
9 Hb_001486_170 0.1520726435 - - PREDICTED: syntaxin-132 [Jatropha curcas]
10 Hb_000022_200 0.1523119517 - - PREDICTED: uncharacterized protein LOC105638292 [Jatropha curcas]
11 Hb_000261_330 0.1526299822 - - PREDICTED: ER lumen protein-retaining receptor [Amborella trichopoda]
12 Hb_007919_080 0.1544348009 - - PREDICTED: uncharacterized protein At1g76660 isoform X1 [Jatropha curcas]
13 Hb_000494_080 0.1548465511 - - Palmitoyl-protein thioesterase 1 precursor, putative [Ricinus communis]
14 Hb_000270_870 0.1565226792 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
15 Hb_000599_080 0.1567995275 - - PREDICTED: TOM1-like protein 1 [Malus domestica]
16 Hb_001501_080 0.1576288874 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
17 Hb_012725_070 0.159237963 - - PREDICTED: uncharacterized protein LOC105636534 isoform X1 [Jatropha curcas]
18 Hb_000983_120 0.1596187646 - - cyclin-dependent protein kinase, putative [Ricinus communis]
19 Hb_003688_050 0.1596528221 - - PREDICTED: uncharacterized protein LOC105640616 isoform X2 [Jatropha curcas]
20 Hb_000808_050 0.1602494635 - - exonuclease, putative [Ricinus communis]

Gene co-expression network

sample Hb_024836_010 Hb_024836_010 Hb_002485_030 Hb_002485_030 Hb_024836_010--Hb_002485_030 Hb_003688_040 Hb_003688_040 Hb_024836_010--Hb_003688_040 Hb_000300_690 Hb_000300_690 Hb_024836_010--Hb_000300_690 Hb_006405_050 Hb_006405_050 Hb_024836_010--Hb_006405_050 Hb_001817_150 Hb_001817_150 Hb_024836_010--Hb_001817_150 Hb_001085_260 Hb_001085_260 Hb_024836_010--Hb_001085_260 Hb_002485_030--Hb_001085_260 Hb_003760_030 Hb_003760_030 Hb_002485_030--Hb_003760_030 Hb_003119_090 Hb_003119_090 Hb_002485_030--Hb_003119_090 Hb_006816_100 Hb_006816_100 Hb_002485_030--Hb_006816_100 Hb_000103_120 Hb_000103_120 Hb_002485_030--Hb_000103_120 Hb_000494_080 Hb_000494_080 Hb_002485_030--Hb_000494_080 Hb_004097_130 Hb_004097_130 Hb_003688_040--Hb_004097_130 Hb_003688_040--Hb_002485_030 Hb_000108_050 Hb_000108_050 Hb_003688_040--Hb_000108_050 Hb_000022_190 Hb_000022_190 Hb_003688_040--Hb_000022_190 Hb_000635_090 Hb_000635_090 Hb_003688_040--Hb_000635_090 Hb_000056_040 Hb_000056_040 Hb_000300_690--Hb_000056_040 Hb_000690_160 Hb_000690_160 Hb_000300_690--Hb_000690_160 Hb_000599_180 Hb_000599_180 Hb_000300_690--Hb_000599_180 Hb_000046_040 Hb_000046_040 Hb_000300_690--Hb_000046_040 Hb_004884_070 Hb_004884_070 Hb_000300_690--Hb_004884_070 Hb_000261_330 Hb_000261_330 Hb_006405_050--Hb_000261_330 Hb_006405_050--Hb_006816_100 Hb_006405_050--Hb_000494_080 Hb_000115_080 Hb_000115_080 Hb_006405_050--Hb_000115_080 Hb_000808_050 Hb_000808_050 Hb_006405_050--Hb_000808_050 Hb_000563_600 Hb_000563_600 Hb_001817_150--Hb_000563_600 Hb_014361_150 Hb_014361_150 Hb_001817_150--Hb_014361_150 Hb_000599_080 Hb_000599_080 Hb_001817_150--Hb_000599_080 Hb_010362_030 Hb_010362_030 Hb_001817_150--Hb_010362_030 Hb_057878_010 Hb_057878_010 Hb_001817_150--Hb_057878_010 Hb_000567_190 Hb_000567_190 Hb_001817_150--Hb_000567_190 Hb_002960_150 Hb_002960_150 Hb_001085_260--Hb_002960_150 Hb_001085_260--Hb_003760_030 Hb_002284_210 Hb_002284_210 Hb_001085_260--Hb_002284_210 Hb_000207_150 Hb_000207_150 Hb_001085_260--Hb_000207_150 Hb_001085_260--Hb_003119_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.1947 9.79489 35.7379 23.6668 11.4998 22.1177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.13418 8.9774 16.284 2.59769 10.4313

CAGE analysis