Hb_024847_010

Information

Type -
Description -
Location Contig24847: 32102-54260
Sequence    

Annotation

kegg
ID gmx:100791662
description UPF0586 protein C9orf41 homolog
nr
ID KEH35165.1
description UPF0586 C9orf41-like protein [Medicago truncatula]
swissprot
ID Q5BJZ6
description UPF0586 protein C9orf41 homolog OS=Rattus norvegicus PE=2 SV=1
trembl
ID A0A072VAE6
description UPF0586 C9orf41-like protein OS=Medicago truncatula GN=MTR_3g081180 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25850: 39293-39582 , PASA_asmbl_25851: 32196-54202 , PASA_asmbl_25853: 32877-54202
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024847_010 0.0 - - UPF0586 C9orf41-like protein [Medicago truncatula]
2 Hb_006120_070 0.076756252 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
3 Hb_003964_070 0.0804736701 - - hypothetical protein JCGZ_15695 [Jatropha curcas]
4 Hb_001142_030 0.0824572351 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
5 Hb_002918_030 0.082755046 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
6 Hb_001188_070 0.0842094925 - - PREDICTED: protein disulfide-isomerase 5-1 [Jatropha curcas]
7 Hb_003665_060 0.0852917986 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
8 Hb_003125_160 0.0861222061 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
9 Hb_000054_090 0.087538729 - - zinc finger protein, putative [Ricinus communis]
10 Hb_001575_070 0.0893501527 - - PREDICTED: uncharacterized protein LOC105639885 [Jatropha curcas]
11 Hb_001268_240 0.0898531134 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
12 Hb_001357_350 0.0908303887 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003416_010 0.0912041165 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Malus domestica]
14 Hb_004841_010 0.0913329056 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
15 Hb_156973_010 0.092256245 - - conserved hypothetical protein [Ricinus communis]
16 Hb_120410_010 0.0927022746 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
17 Hb_009694_010 0.0928020075 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000521_120 0.0940610903 - - PREDICTED: cyclic pyranopterin monophosphate synthase, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_001104_180 0.0961031004 - - PREDICTED: ribosome production factor 2 homolog isoform X1 [Jatropha curcas]
20 Hb_001946_400 0.0963807167 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_024847_010 Hb_024847_010 Hb_006120_070 Hb_006120_070 Hb_024847_010--Hb_006120_070 Hb_003964_070 Hb_003964_070 Hb_024847_010--Hb_003964_070 Hb_001142_030 Hb_001142_030 Hb_024847_010--Hb_001142_030 Hb_002918_030 Hb_002918_030 Hb_024847_010--Hb_002918_030 Hb_001188_070 Hb_001188_070 Hb_024847_010--Hb_001188_070 Hb_003665_060 Hb_003665_060 Hb_024847_010--Hb_003665_060 Hb_005697_060 Hb_005697_060 Hb_006120_070--Hb_005697_060 Hb_006120_070--Hb_002918_030 Hb_001512_060 Hb_001512_060 Hb_006120_070--Hb_001512_060 Hb_000959_210 Hb_000959_210 Hb_006120_070--Hb_000959_210 Hb_001329_290 Hb_001329_290 Hb_006120_070--Hb_001329_290 Hb_003964_070--Hb_003665_060 Hb_007317_110 Hb_007317_110 Hb_003964_070--Hb_007317_110 Hb_000120_670 Hb_000120_670 Hb_003964_070--Hb_000120_670 Hb_001357_350 Hb_001357_350 Hb_003964_070--Hb_001357_350 Hb_000345_240 Hb_000345_240 Hb_003964_070--Hb_000345_240 Hb_010381_090 Hb_010381_090 Hb_003964_070--Hb_010381_090 Hb_002740_030 Hb_002740_030 Hb_001142_030--Hb_002740_030 Hb_003125_120 Hb_003125_120 Hb_001142_030--Hb_003125_120 Hb_008453_140 Hb_008453_140 Hb_001142_030--Hb_008453_140 Hb_001163_050 Hb_001163_050 Hb_001142_030--Hb_001163_050 Hb_000580_180 Hb_000580_180 Hb_001142_030--Hb_000580_180 Hb_120410_010 Hb_120410_010 Hb_001142_030--Hb_120410_010 Hb_003125_160 Hb_003125_160 Hb_002918_030--Hb_003125_160 Hb_000174_110 Hb_000174_110 Hb_002918_030--Hb_000174_110 Hb_000260_100 Hb_000260_100 Hb_002918_030--Hb_000260_100 Hb_006620_020 Hb_006620_020 Hb_002918_030--Hb_006620_020 Hb_000230_560 Hb_000230_560 Hb_002918_030--Hb_000230_560 Hb_011618_050 Hb_011618_050 Hb_001188_070--Hb_011618_050 Hb_001268_240 Hb_001268_240 Hb_001188_070--Hb_001268_240 Hb_001205_250 Hb_001205_250 Hb_001188_070--Hb_001205_250 Hb_005144_090 Hb_005144_090 Hb_001188_070--Hb_005144_090 Hb_002783_170 Hb_002783_170 Hb_001188_070--Hb_002783_170 Hb_000010_330 Hb_000010_330 Hb_003665_060--Hb_000010_330 Hb_003665_060--Hb_007317_110 Hb_003665_060--Hb_000230_560 Hb_003030_070 Hb_003030_070 Hb_003665_060--Hb_003030_070 Hb_000085_160 Hb_000085_160 Hb_003665_060--Hb_000085_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8084 5.38158 10.5274 11.6623 13.5778 14.4435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.97626 15.7058 6.72224 8.37906 10.228

CAGE analysis