Hb_024857_010

Information

Type -
Description -
Location Contig24857: 11240-11674
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24340g
description POPTRDRAFT_415708; hypothetical protein
nr
ID AEC03330.1
description glutaredoxin 2.1 [Hevea brasiliensis]
swissprot
ID Q8L9S3
description Glutaredoxin-C6 OS=Arabidopsis thaliana GN=GRXC6 PE=2 SV=2
trembl
ID I1SSK1
description Glutaredoxin 2.1 OS=Hevea brasiliensis GN=Grx2.1 PE=2 SV=1
Gene Ontology
ID GO:0005737
description glutaredoxin-c6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024857_010 0.0 - - glutaredoxin 2.1 [Hevea brasiliensis]
2 Hb_002236_020 0.0702430856 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
3 Hb_087468_010 0.0823598124 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
4 Hb_000656_370 0.0934733874 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
5 Hb_000252_190 0.0952386781 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
6 Hb_002239_030 0.0967266527 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
7 Hb_000101_140 0.0994630952 - - amino acid transporter, putative [Ricinus communis]
8 Hb_007305_040 0.1016863385 - - Nodulin-26, putative [Ricinus communis]
9 Hb_002968_010 0.1187317108 - - PREDICTED: pectinesterase [Jatropha curcas]
10 Hb_004122_020 0.121314806 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
11 Hb_011928_030 0.1220870397 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
12 Hb_000723_060 0.1233183734 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
13 Hb_005147_020 0.1242199943 - - PREDICTED: uncharacterized protein LOC105629671 [Jatropha curcas]
14 Hb_000431_030 0.1341822771 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
15 Hb_002248_090 0.1350208956 - - metallothionein 3-like protein [Hevea brasiliensis]
16 Hb_000625_040 0.1377059836 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
17 Hb_000111_150 0.1379723984 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
18 Hb_001897_030 0.1388992337 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
19 Hb_006615_180 0.1399126371 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
20 Hb_004531_010 0.141408613 - - PREDICTED: ankyrin repeat-containing protein At2g01680-like [Jatropha curcas]

Gene co-expression network

sample Hb_024857_010 Hb_024857_010 Hb_002236_020 Hb_002236_020 Hb_024857_010--Hb_002236_020 Hb_087468_010 Hb_087468_010 Hb_024857_010--Hb_087468_010 Hb_000656_370 Hb_000656_370 Hb_024857_010--Hb_000656_370 Hb_000252_190 Hb_000252_190 Hb_024857_010--Hb_000252_190 Hb_002239_030 Hb_002239_030 Hb_024857_010--Hb_002239_030 Hb_000101_140 Hb_000101_140 Hb_024857_010--Hb_000101_140 Hb_002236_020--Hb_000656_370 Hb_002236_020--Hb_000252_190 Hb_007305_040 Hb_007305_040 Hb_002236_020--Hb_007305_040 Hb_004122_020 Hb_004122_020 Hb_002236_020--Hb_004122_020 Hb_002968_010 Hb_002968_010 Hb_002236_020--Hb_002968_010 Hb_000111_150 Hb_000111_150 Hb_087468_010--Hb_000111_150 Hb_087468_010--Hb_000252_190 Hb_001897_030 Hb_001897_030 Hb_087468_010--Hb_001897_030 Hb_132517_010 Hb_132517_010 Hb_087468_010--Hb_132517_010 Hb_005396_110 Hb_005396_110 Hb_087468_010--Hb_005396_110 Hb_000656_370--Hb_002968_010 Hb_000656_370--Hb_000101_140 Hb_145139_010 Hb_145139_010 Hb_000656_370--Hb_145139_010 Hb_000656_370--Hb_004122_020 Hb_005714_140 Hb_005714_140 Hb_000252_190--Hb_005714_140 Hb_003800_010 Hb_003800_010 Hb_000252_190--Hb_003800_010 Hb_000252_190--Hb_000656_370 Hb_002239_030--Hb_000101_140 Hb_000723_060 Hb_000723_060 Hb_002239_030--Hb_000723_060 Hb_002248_090 Hb_002248_090 Hb_002239_030--Hb_002248_090 Hb_002239_030--Hb_000656_370 Hb_060237_010 Hb_060237_010 Hb_002239_030--Hb_060237_010 Hb_000101_140--Hb_000723_060 Hb_000101_140--Hb_002968_010 Hb_006615_180 Hb_006615_180 Hb_000101_140--Hb_006615_180 Hb_000521_210 Hb_000521_210 Hb_000101_140--Hb_000521_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.18704 66.461 4.64214 27.8668 0.0680881 0.196256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 8.48715 2.89974

CAGE analysis