Hb_024868_010

Information

Type -
Description -
Location Contig24868: 35779-39337
Sequence    

Annotation

kegg
ID rcu:RCOM_1093220
description protein kinase, putative (EC:2.7.10.2)
nr
ID XP_002526619.1
description protein kinase, putative [Ricinus communis]
swissprot
ID Q55GU0
description Probable serine/threonine-protein kinase DDB_G0267514 OS=Dictyostelium discoideum GN=DDB_G0267514 PE=3 SV=1
trembl
ID B9SKV0
description Protein kinase, putative OS=Ricinus communis GN=RCOM_1093220 PE=4 SV=1
Gene Ontology
ID GO:0004715
description probable lim domain-containing serine threonine-protein kinase ddb_g0287001

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25882: 37974-38933
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024868_010 0.0 - - protein kinase, putative [Ricinus communis]
2 Hb_009838_120 0.0724076007 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
3 Hb_001645_030 0.0820221851 - - PREDICTED: probable auxin efflux carrier component 1b [Jatropha curcas]
4 Hb_189208_050 0.0838343559 - - PREDICTED: uncharacterized protein LOC105642694 isoform X2 [Jatropha curcas]
5 Hb_000631_100 0.0846882796 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
6 Hb_009627_020 0.0866900032 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
7 Hb_003216_140 0.0879766369 - - F-box protein SNE, putative [Ricinus communis]
8 Hb_008021_040 0.0890131156 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
9 Hb_004659_100 0.0975379488 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002304_100 0.1031824198 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
11 Hb_087427_010 0.1107668229 - - hypothetical protein PRUPE_ppa007748mg [Prunus persica]
12 Hb_002641_140 0.1122767664 - - protein phosphatase 2c, putative [Ricinus communis]
13 Hb_001247_090 0.1174778666 - - PREDICTED: uncharacterized protein LOC105647395 [Jatropha curcas]
14 Hb_005679_120 0.1193843185 - - hypothetical protein RCOM_0284080 [Ricinus communis]
15 Hb_004031_050 0.1196834987 - - sinapyl alcohol dehydrogenase-like protein [Populus tremula x Populus tremuloides]
16 Hb_029142_040 0.1197352262 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
17 Hb_002897_030 0.1227110779 - - PREDICTED: methylesterase 17 [Jatropha curcas]
18 Hb_033053_020 0.1236647781 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
19 Hb_000411_020 0.1263694531 - - cytochrome P450, putative [Ricinus communis]
20 Hb_043789_010 0.1272565956 transcription factor TF Family: AP2 hypothetical protein VITISV_034131 [Vitis vinifera]

Gene co-expression network

sample Hb_024868_010 Hb_024868_010 Hb_009838_120 Hb_009838_120 Hb_024868_010--Hb_009838_120 Hb_001645_030 Hb_001645_030 Hb_024868_010--Hb_001645_030 Hb_189208_050 Hb_189208_050 Hb_024868_010--Hb_189208_050 Hb_000631_100 Hb_000631_100 Hb_024868_010--Hb_000631_100 Hb_009627_020 Hb_009627_020 Hb_024868_010--Hb_009627_020 Hb_003216_140 Hb_003216_140 Hb_024868_010--Hb_003216_140 Hb_009838_120--Hb_009627_020 Hb_004659_100 Hb_004659_100 Hb_009838_120--Hb_004659_100 Hb_008021_040 Hb_008021_040 Hb_009838_120--Hb_008021_040 Hb_005679_120 Hb_005679_120 Hb_009838_120--Hb_005679_120 Hb_139461_010 Hb_139461_010 Hb_009838_120--Hb_139461_010 Hb_002304_100 Hb_002304_100 Hb_001645_030--Hb_002304_100 Hb_000243_340 Hb_000243_340 Hb_001645_030--Hb_000243_340 Hb_000834_130 Hb_000834_130 Hb_001645_030--Hb_000834_130 Hb_002601_040 Hb_002601_040 Hb_001645_030--Hb_002601_040 Hb_000568_020 Hb_000568_020 Hb_001645_030--Hb_000568_020 Hb_189208_050--Hb_003216_140 Hb_000411_020 Hb_000411_020 Hb_189208_050--Hb_000411_020 Hb_189208_050--Hb_000631_100 Hb_002641_140 Hb_002641_140 Hb_189208_050--Hb_002641_140 Hb_001247_090 Hb_001247_090 Hb_189208_050--Hb_001247_090 Hb_000631_100--Hb_000411_020 Hb_087427_010 Hb_087427_010 Hb_000631_100--Hb_087427_010 Hb_000631_100--Hb_002641_140 Hb_000631_100--Hb_008021_040 Hb_000479_230 Hb_000479_230 Hb_009627_020--Hb_000479_230 Hb_009627_020--Hb_005679_120 Hb_009627_020--Hb_004659_100 Hb_009627_020--Hb_000631_100 Hb_003216_140--Hb_001247_090 Hb_003216_140--Hb_000411_020 Hb_003216_140--Hb_000631_100 Hb_027556_060 Hb_027556_060 Hb_003216_140--Hb_027556_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0492981 1.42036 2.14148 5.37939 0.0369205 0.0275795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0224068 0 0 2.06904 0.558997

CAGE analysis