Hb_024937_020

Information

Type -
Description -
Location Contig24937: 25486-28123
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25922: 25886-26249 , PASA_asmbl_25923: 27809-27962
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024937_020 0.0 - - -
2 Hb_030627_080 0.2109592481 - - protein with unknown function [Ricinus communis]
3 Hb_000672_020 0.277433463 - - Peptidoglycan-binding LysM domain-containing protein, putative isoform 3 [Theobroma cacao]
4 Hb_000427_070 0.2906588001 - - -
5 Hb_074979_010 0.2946214244 - - hypothetical protein AALP_AA2G213100 [Arabis alpina]
6 Hb_001517_020 0.2978071405 - - PREDICTED: probable ATP-dependent RNA helicase DDX11 [Jatropha curcas]
7 Hb_001268_090 0.3024422087 - - Uncharacterized protein TCM_020504 [Theobroma cacao]
8 Hb_000397_100 0.3099749297 - - hypothetical protein 31 [Hevea brasiliensis]
9 Hb_002784_070 0.3139226997 - - BnaUnng01470D [Brassica napus]
10 Hb_003861_040 0.3156323288 - - hypothetical protein JCGZ_16325 [Jatropha curcas]
11 Hb_056506_050 0.3182662299 - - hypothetical protein B456_007G294000 [Gossypium raimondii]
12 Hb_000108_140 0.31949606 - - hypothetical protein CICLE_v10019690mg [Citrus clementina]
13 Hb_000340_520 0.3206685215 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
14 Hb_012725_090 0.321016334 - - PREDICTED: uncharacterized protein LOC105636535 [Jatropha curcas]
15 Hb_046440_010 0.3230593476 - - hypothetical protein JCGZ_06190 [Jatropha curcas]
16 Hb_009780_070 0.3240928838 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
17 Hb_017462_010 0.3242792504 - - -
18 Hb_098852_010 0.3251335647 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
19 Hb_000120_190 0.3295975933 - - Pre-mRNA-splicing factor ini1 [Ricinus communis]
20 Hb_002046_170 0.3298897318 - - PREDICTED: petal death protein [Eucalyptus grandis]

Gene co-expression network

sample Hb_024937_020 Hb_024937_020 Hb_030627_080 Hb_030627_080 Hb_024937_020--Hb_030627_080 Hb_000672_020 Hb_000672_020 Hb_024937_020--Hb_000672_020 Hb_000427_070 Hb_000427_070 Hb_024937_020--Hb_000427_070 Hb_074979_010 Hb_074979_010 Hb_024937_020--Hb_074979_010 Hb_001517_020 Hb_001517_020 Hb_024937_020--Hb_001517_020 Hb_001268_090 Hb_001268_090 Hb_024937_020--Hb_001268_090 Hb_135940_010 Hb_135940_010 Hb_030627_080--Hb_135940_010 Hb_030627_080--Hb_000672_020 Hb_002067_100 Hb_002067_100 Hb_030627_080--Hb_002067_100 Hb_001579_310 Hb_001579_310 Hb_030627_080--Hb_001579_310 Hb_075359_010 Hb_075359_010 Hb_030627_080--Hb_075359_010 Hb_003352_040 Hb_003352_040 Hb_000672_020--Hb_003352_040 Hb_011537_110 Hb_011537_110 Hb_000672_020--Hb_011537_110 Hb_001504_080 Hb_001504_080 Hb_000672_020--Hb_001504_080 Hb_002422_070 Hb_002422_070 Hb_000672_020--Hb_002422_070 Hb_012794_010 Hb_012794_010 Hb_000672_020--Hb_012794_010 Hb_012653_040 Hb_012653_040 Hb_000672_020--Hb_012653_040 Hb_000943_020 Hb_000943_020 Hb_000427_070--Hb_000943_020 Hb_053971_010 Hb_053971_010 Hb_000427_070--Hb_053971_010 Hb_001247_190 Hb_001247_190 Hb_000427_070--Hb_001247_190 Hb_009780_070 Hb_009780_070 Hb_000427_070--Hb_009780_070 Hb_000342_160 Hb_000342_160 Hb_000427_070--Hb_000342_160 Hb_000162_100 Hb_000162_100 Hb_074979_010--Hb_000162_100 Hb_076875_020 Hb_076875_020 Hb_074979_010--Hb_076875_020 Hb_000108_140 Hb_000108_140 Hb_074979_010--Hb_000108_140 Hb_003633_040 Hb_003633_040 Hb_074979_010--Hb_003633_040 Hb_067776_010 Hb_067776_010 Hb_074979_010--Hb_067776_010 Hb_001386_140 Hb_001386_140 Hb_074979_010--Hb_001386_140 Hb_005725_090 Hb_005725_090 Hb_001517_020--Hb_005725_090 Hb_000500_060 Hb_000500_060 Hb_001517_020--Hb_000500_060 Hb_001517_020--Hb_002067_100 Hb_002828_040 Hb_002828_040 Hb_001517_020--Hb_002828_040 Hb_002609_060 Hb_002609_060 Hb_001517_020--Hb_002609_060 Hb_000907_170 Hb_000907_170 Hb_001517_020--Hb_000907_170 Hb_013749_010 Hb_013749_010 Hb_001268_090--Hb_013749_010 Hb_001767_130 Hb_001767_130 Hb_001268_090--Hb_001767_130 Hb_089202_010 Hb_089202_010 Hb_001268_090--Hb_089202_010 Hb_000397_100 Hb_000397_100 Hb_001268_090--Hb_000397_100 Hb_001268_090--Hb_000427_070 Hb_001711_050 Hb_001711_050 Hb_001268_090--Hb_001711_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.771606 0 0 0.868335 0 1.38837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.200239 0.629132 1.00612 0.80911 0

CAGE analysis